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qiime2-2023.5 version

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@ksilnoaa ksilnoaa released this 29 Aug 17:28
· 22 commits to master since this release
v1.1.1
16e3e4c
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What's Changed

Updated Tourmaline to work with qiime2-2023.5. In this version, you must install snakemake in a separate environment, and run Tourmaline commands in the snakemake environment.

Breaking changes

  • Qiime2 artifacts created with qiime2-2023.5 are NOT backward compatible with previous versions of qiime2 or Tourmaline. Artifact created with previous versions are compatible with this version, though.

Feature updates

  • Added export_asv_taxa_obis rule to create 01-taxonomy/asv_taxa_sample_table.tsv file that combines ASV sequences, taxonomy, and per-sample read counts. This file can be used for conversion to OBIS/GBIF format.
  • Added support for user-provided classifier when doing naives-bayes. Must be provided as "classifier.qza" in the "01-imported/" folder.
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