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emitanaka committed Sep 20, 2024
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

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2 changes: 1 addition & 1 deletion slides/slide1.html
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<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
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<meta name="author" content="Emi Tanaka">
<title>ANU BDSI – Statistical anatomy of experiments</title>
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<link href="../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
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<title>ANU BDSI – Principles of experimental designs</title>
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};

// Store cell data
globalThis.qwebrCellDetails = [{"id":1,"code":"library(edibble)\nset.seed(1) # to replicate the result \ndesign(\"Randomised complete block design\") |> \n set_units(pen = 3, \n cow = nested_in(pen, 2)) |> \n set_trts(supplement = c(\"new\", \"control\")) |> \n allot_table(supplement ~ cow, order = \"random\")","options":{"context":"interactive","output":"true","fig-cap":"","fig-height":5,"classes":"","read-only":"false","out-height":"","results":"markup","fig-width":7,"label":"unnamed-chunk-1","out-width":"700px","warning":"true","autorun":"false","echo":"true","message":"true","dpi":72,"comment":""}},{"id":2,"code":"library(edibble)\ntrt_str <- set_trts(fertilizer = c(\"A\", \"B\"),\n water = c(\"irrigate\", \"rainfed\"))\nunit_str1 <- set_units(plot = 12)\nunit_str2 <- set_units(strip = 6,\n plot = nested_in(strip, 2))\n\ndes1 <- (unit_str1 + trt_str) |> allot_table(fertilizer ~ plot, water ~ plot)\ndes2 <- (unit_str1 + trt_str) |> allot_table(fertilizer:water ~ plot)\ndes3 <- (unit_str2 + trt_str) |> allot_table(fertilizer:water ~ plot)\n\ndes1","options":{"context":"interactive","output":"true","fig-cap":"","fig-height":5,"classes":"","read-only":"false","out-height":"","results":"markup","fig-width":7,"label":"unnamed-chunk-2","out-width":"700px","warning":"true","autorun":"false","echo":"true","message":"true","dpi":72,"comment":""}},{"id":3,"code":"design_anatomy(des3)","options":{"read-only":"false","classes":"","out-height":"","results":"markup","context":"interactive","output":"true","label":"unnamed-chunk-3","out-width":"700px","fig-height":5,"comment":"","fig-width":7,"dpi":72,"fig-cap":"","message":"true","warning":"true","autorun":"false"}},{"id":4,"code":"library(edibble)\ndes_invalid <- design(\"Invalid design\") |> \n set_units(pen = 2, \n cow = nested_in(pen, 3)) |> \n set_trts(supp = c(\"new\", \"control\")) |> \n allot_table(supp ~ pen)\n\ndesign_anatomy(des_invalid)","options":{"read-only":"false","classes":"","out-height":"","results":"markup","context":"interactive","output":"true","label":"unnamed-chunk-4","out-width":"700px","fig-height":5,"comment":"","fig-width":7,"dpi":72,"fig-cap":"","message":"true","warning":"true","autorun":"false"}}];
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</section>
<section id="summary" class="slide level2">
<h2>Summary</h2>
<div>
<ul>
<li class="fragment">Remember the basic design principles: controls, replication, blocking, and randomisaton.</li>
<li class="fragment">Use blinding where applicable to reduce experimental bias.</li>
<li class="fragment">Randomisation is like buying an insurance (but free!).</li>
<li class="fragment">Randomisation helps to protect you from unknown confounding factors.</li>
<li class="fragment">Block what you can, randomise what you cannot.</li>
<li class="fragment">Watch out for pseudoreplication!</li>
<li class="fragment">Randomise using a computer program if possible.</li>
<li class="fragment">Produce a design anatomy to see the spread of the degrees of freedom across sources of variation.</li>
<li>Remember the basic design principles: controls, replication, blocking, and randomisaton.</li>
<li>Use blinding where applicable to reduce experimental bias.</li>
<li>Randomisation is like buying an insurance (but free!).</li>
<li>Randomisation helps to protect you from unknown confounding factors.</li>
<li>Block what you can, randomise what you cannot.</li>
<li>Watch out for pseudoreplication!</li>
<li>Randomise using a computer program if possible.</li>
<li>Produce a design anatomy to see the spread of the degrees of freedom across sources of variation.</li>
</ul>
</div>

<div class="quarto-auto-generated-content">
<p><img src="_extensions/anu-links/anu-light/logo/ANU_ Crest_Gold.png" class="slide-logo"></p>
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