added codecov

.Rbuildignore

@@ -9,3 +9,4 @@
 ^data-raw$
 ^CODE_OF_CONDUCT\.md$
 ^man-roxygen$
+^codecov\.yml$

.github/workflows/test-coverage.yaml

@@ -0,0 +1,61 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+
+name: test-coverage.yaml
+
+permissions: read-all
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr, any::xml2
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          cov <- covr::package_coverage(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
+        shell: Rscript {0}
+
+      - uses: codecov/codecov-action@v4
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

DESCRIPTION

@@ -38,6 +38,7 @@ Remotes:
 Config/roxyglobals/filename: roxyglobals-generated.R
 Config/roxyglobals/unique: TRUE
 Config/testthat/edition: 3
+Config/testthat/parallel: true
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace", "rd",
     "roxyglobals::global_roclet"))

R/nlm_api.R

@@ -66,11 +66,7 @@ icd10api <- function(icd_code = NULL,
 
   stopifnot(
     "Both `icd_code` and `term` cannot be NULL" = all(
-      !is.null(
-        c(icd_code, term)
-        )
-      )
-    )
+      !is.null(c(icd_code, term))))
 
   args <- stringr::str_c(
     c(code = icd_code,

R/utils.R

@@ -1,6 +1,6 @@
 #' Mount [pins][pins::pins-package] board
 #'
-#' @param `<chr>` string; whether source is `"local"` or `"remote"`
+#' @param source `<chr>` string; whether source is `"local"` or `"remote"`
 #'
 #' @returns `<pins_board_folder>` if `source = "local"` or `<pins_board_url>`
 #'    if `source = "remote"`

README.Rmd

@@ -18,10 +18,10 @@ knitr::opts_chunk$set(
 > Tidy ICD-10-CM Interface
 
 <!-- badges: start -->
-[![Codecov](https://codecov.io/gh/andrewallenbruce/pathologie/branch/main/graph/badge.svg)](https://codecov.io/gh/andrewallenbruce/pathologie)
 [![CodeFactor](https://www.codefactor.io/repository/github/andrewallenbruce/pathologie/badge)](https://www.codefactor.io/repository/github/andrewallenbruce/pathologie)
 [![Code size](https://img.shields.io/github/languages/code-size/andrewallenbruce/pathologie.svg)](https://github.com/andrewallenbruce/pathologie)
 [![Last commit](https://img.shields.io/github/last-commit/andrewallenbruce/pathologie.svg)](https://github.com/andrewallenbruce/pathologie/commits/main)
+[![Codecov test coverage](https://codecov.io/gh/andrewallenbruce/pathologie/graph/badge.svg)](https://app.codecov.io/gh/andrewallenbruce/pathologie)
 <!-- badges: end -->
 
 ## :package: Installation

README.md

@@ -7,12 +7,13 @@
 
 <!-- badges: start -->
 
-[![Codecov](https://codecov.io/gh/andrewallenbruce/pathologie/branch/main/graph/badge.svg)](https://codecov.io/gh/andrewallenbruce/pathologie)
 [![CodeFactor](https://www.codefactor.io/repository/github/andrewallenbruce/pathologie/badge)](https://www.codefactor.io/repository/github/andrewallenbruce/pathologie)
 [![Code
 size](https://img.shields.io/github/languages/code-size/andrewallenbruce/pathologie.svg)](https://github.com/andrewallenbruce/pathologie)
 [![Last
 commit](https://img.shields.io/github/last-commit/andrewallenbruce/pathologie.svg)](https://github.com/andrewallenbruce/pathologie/commits/main)
+[![Codecov test
+coverage](https://codecov.io/gh/andrewallenbruce/pathologie/graph/badge.svg)](https://app.codecov.io/gh/andrewallenbruce/pathologie)
 <!-- badges: end -->
 
 ## :package: Installation

codecov.yml

@@ -0,0 +1,14 @@
+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true
+    patch:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true