Run all analysis workflows #3

	# This is a workflow to all of the analysis module workflows
	#
	# This workflow will run with the following triggers
	# - Manual trigger
	# - Periodic running on a timer

	name: Run all analysis workflows
	on:
	schedule: # run monthly on the 4th (intended to run after docker images are built)
	- cron: "0 0 4 * *"
	workflow_dispatch:

	jobs:
	# Modules to run
	# Note: only 20 modules can be run per workflow
	hello-R:
	uses: ./.github/workflows/run_hello-R.yml

	hello-python:
	uses: ./.github/workflows/run_hello-python.yml

	doublet-detection:
	uses: ./.github/workflows/run_doublet-detection.yml

	cell-type-ewings:
	uses: ./.github/workflows/run_cell-type-ewings.yml

	## Add additional modules above this comment, and to the needs list below
	check-jobs:
	if: ${{ always() }}
	needs:
	- hello-R
	- hello-python
	- doublet-detection
	- cell-type-ewings
	runs-on: ubuntu-latest
	steps:
	- name: Checkout template file
	uses: actions/checkout@v4
	with:
	sparse-checkout: \|
	.github/cron-issue-templates/all-modules-issue-template.md
	sparse-checkout-cone-mode: false

	- name: Post issue with results from running all modules
	if: contains(needs.*.result, 'failure')
	uses: peter-evans/create-issue-from-file@v5
	with:
	title: Analysis module failing in CI
	content-filepath: \|
	.github/cron-issue-templates/all-modules-issue-template.md
	labels: \|
	OpenScPCA admin
	ci

	- name: Check for failures or cancelled jobs
	if: contains(needs..result, 'failure') \|\| contains(needs..result, 'cancelled')
	run: echo "Job failed" && exit 1

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