Protein Dynamics

This repository contains Python modules and functions for interacting with protein prediction data from BrisSynBio.

Modules

protein.py

Functions for interacting with the raw data in .pdb format. Also contains procedures for generating random joint and protein sequences.

representations.py

Functions for creating simplified representations of the data.

See the following tutorial notebooks to get started.

distributions.py

Functions for exploring the distributions of parameters of the representations.

See the tutorial to get started.

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
.gitignore		.gitignore
Comparing Distributions.ipynb		Comparing Distributions.ipynb
Creating New Proteins.ipynb		Creating New Proteins.ipynb
Exploring Representations.ipynb		Exploring Representations.ipynb
README.md		README.md
distributions.py		distributions.py
full_rplist.txt		full_rplist.txt
generate_representation_matrix.py		generate_representation_matrix.py
modules-length.txt		modules-length.txt
protein.py		protein.py
representationdata.txt		representationdata.txt
representations.py		representations.py