Create NeedlemanWunsch.py #1
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This version takes two input files along with a similarity score matrix and gap penalty through terminal/command line
| import alignment #import the file with the functions | ||
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| # Command-line arguments for 3 files and one integer. | ||
| f1 = open(sys.argv[1], 'r') #first fasta/txt file |
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sounds good, i'm ready to accept this, but one small nit:
for readability, please assign all argv[...] to variables at the beginning of the program, e.g.:
fasta_file_one = sys.argv[1]
fasta_file_two = sys.argv[2]
substitution_matrix_file = sys.argv[3]
gap_penalty = sys.argv[4]
and then use the variables in the code.
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This version takes two input files along with a similarity score matrix and gap penalty through terminal/command line