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SHAMAN 1.0.4

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@aghozlane aghozlane released this 20 Feb 17:15
· 149 commits to master since this release
  • We have implemented significant enhancements to the design of PCA and PCoA analyses, now incorporating biplot analysis and cos2 analysis. Additionally, UMAP analysis has been integrated into the diagnostic plot section.

In the visualization section, notable improvements have been made.

  • The barplot now includes a distinct "other" category, representing species beyond the 12 most abundant ones. Moreover, diversity analysis has undergone a complete transformation, enabling the execution of Wilcoxon tests for groups of interest.

  • For network analysis, three algorithms for community research have been integrated. Each community now features a sunburst visualization, providing deeper insights into its structure. Additionally, where the study design permits, we calculate partial correlations between species abundance.

We extend our gratitude to Zakary Azmani for his invaluable contributions to these advancements!