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@aghaeifar
aghaeifar committed Mar 3, 2023
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58 changes: 30 additions & 28 deletions inputs/boston/Boston.ini
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Original file line number Diff line number Diff line change
Expand Up @@ -3,35 +3,37 @@
PARENT_CONFIG = ../config_default.ini

[FILES]
FIELDMAP[0] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Field_Y=0p77_S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[1] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Field_Y=0p77_S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[2] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Field_Y=0p77_S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[3] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Field_Y=0p77_S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[4] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Field_Y=0p77_S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat
FIELDMAP[0] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=01_crtd=02-Mar-2023_13_43_53_orig=S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[1] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=01_crtd=02-Mar-2023_13_13_47_orig=S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[2] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=01_crtd=02-Mar-2023_14_16_20_orig=S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[3] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=01_crtd=02-Mar-2023_14_28_53_orig=S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[4] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=01_crtd=02-Mar-2023_14_39_42_orig=S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat
FIELDMAP[5] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=02_crtd=02-Mar-2023_13_46_02_orig=S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[6] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=02_crtd=02-Mar-2023_13_15_02_orig=S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[7] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=02_crtd=02-Mar-2023_14_18_02_orig=S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[8] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=02_crtd=02-Mar-2023_14_30_37_orig=S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[9] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=02_crtd=02-Mar-2023_14_41_47_orig=S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat
FIELDMAP[10] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=03_crtd=02-Mar-2023_13_47_45_orig=S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[11] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=03_crtd=02-Mar-2023_13_16_16_orig=S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[12] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=03_crtd=02-Mar-2023_14_19_37_orig=S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[13] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=03_crtd=02-Mar-2023_14_32_03_orig=S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[14] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=03_crtd=02-Mar-2023_14_43_25_orig=S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat
FIELDMAP[15] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=04_crtd=02-Mar-2023_13_49_13_orig=S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[16] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=04_crtd=02-Mar-2023_13_17_31_orig=S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[17] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=04_crtd=02-Mar-2023_14_21_29_orig=S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[18] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=04_crtd=02-Mar-2023_14_33_31_orig=S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[19] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=04_crtd=02-Mar-2023_14_44_56_orig=S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat
FIELDMAP[20] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=05_crtd=02-Mar-2023_13_50_39_orig=S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[21] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=05_crtd=02-Mar-2023_13_18_45_orig=S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[22] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=05_crtd=02-Mar-2023_14_23_23_orig=S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[23] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=05_crtd=02-Mar-2023_14_34_57_orig=S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[24] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=05_crtd=02-Mar-2023_14_46_43_orig=S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat
FIELDMAP[25] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=06_crtd=02-Mar-2023_13_52_14_orig=S4_401_4030_closure_tortuous_case0_1ms_27-Feb-2023_11_00_41_chi=1p3722e-06.dat
FIELDMAP[26] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=06_crtd=02-Mar-2023_13_20_00_orig=S4_401_4030_closure_tortuous_case0_1000ms_27-Feb-2023_10_57_44_chi=1p3722e-06.dat
FIELDMAP[27] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=06_crtd=02-Mar-2023_14_25_22_orig=S4_401_4030_closure_tortuous_case0_2000ms_27-Feb-2023_11_03_16_chi=1p3722e-06.dat
FIELDMAP[28] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=06_crtd=02-Mar-2023_14_36_22_orig=S4_401_4030_closure_tortuous_case0_3000ms_27-Feb-2023_11_05_57_chi=1p3722e-06.dat
FIELDMAP[29] = /DATA/aaghaeifar/rawdata/Microvascular/Fields4Ali/Boston/Orientation/Fieldmap_HyprPr=06_crtd=02-Mar-2023_14_48_45_orig=S4_401_4030_closure_tortuous_case0_4000ms_27-Feb-2023_11_08_36_chi=1p3722e-06.dat

XYZ0[0] =
XYZ0[1] =
XYZ0[2] =
XYZ0[3] =
XYZ0[4] =

XYZ1[0] =
XYZ1[1] =
XYZ1[2] =
XYZ1[3] =
XYZ1[4] =

M0[0] =
M0[1] =
M0[2] =
M0[3] =
M0[4] =

M1[0] =
M1[1] =
M1[2] =
M1[3] =
M1[4] =

[SIMULATION_PARAMETERS]
SAMPLE_LENGTH_SCALES[0] = 1.0
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35 changes: 30 additions & 5 deletions inputs/boston/Boston_gre.ini
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Expand Up @@ -2,11 +2,36 @@
PARENT_CONFIG = Boston.ini

[FILES]
M1[0] = ./outputs/gre_boston_m1_0.dat
M1[1] = ./outputs/gre_boston_m1_1.dat
M1[2] = ./outputs/gre_boston_m1_2.dat
M1[3] = ./outputs/gre_boston_m1_3.dat
M1[4] = ./outputs/gre_boston_m1_4.dat
M1[0] = ./outputs/gre_boston_m1_0_rot00.dat
M1[1] = ./outputs/gre_boston_m1_1_rot00.dat
M1[2] = ./outputs/gre_boston_m1_2_rot00.dat
M1[3] = ./outputs/gre_boston_m1_3_rot00.dat
M1[4] = ./outputs/gre_boston_m1_4_rot00.dat
M1[5] = ./outputs/gre_boston_m1_0_rot18.dat
M1[6] = ./outputs/gre_boston_m1_1_rot18.dat
M1[7] = ./outputs/gre_boston_m1_2_rot18.dat
M1[8] = ./outputs/gre_boston_m1_3_rot18.dat
M1[9] = ./outputs/gre_boston_m1_4_rot18.dat
M1[10] = ./outputs/gre_boston_m1_0_rot36.dat
M1[11] = ./outputs/gre_boston_m1_1_rot36.dat
M1[12] = ./outputs/gre_boston_m1_2_rot36.dat
M1[13] = ./outputs/gre_boston_m1_3_rot36.dat
M1[14] = ./outputs/gre_boston_m1_4_rot36.dat
M1[15] = ./outputs/gre_boston_m1_0_rot54.dat
M1[16] = ./outputs/gre_boston_m1_1_rot54.dat
M1[17] = ./outputs/gre_boston_m1_2_rot54.dat
M1[18] = ./outputs/gre_boston_m1_3_rot54.dat
M1[19] = ./outputs/gre_boston_m1_4_rot54.dat
M1[20] = ./outputs/gre_boston_m1_0_rot72.dat
M1[21] = ./outputs/gre_boston_m1_1_rot72.dat
M1[22] = ./outputs/gre_boston_m1_2_rot72.dat
M1[23] = ./outputs/gre_boston_m1_3_rot72.dat
M1[24] = ./outputs/gre_boston_m1_4_rot72.dat
M1[25] = ./outputs/gre_boston_m1_0_rot90.dat
M1[26] = ./outputs/gre_boston_m1_1_rot90.dat
M1[27] = ./outputs/gre_boston_m1_2_rot90.dat
M1[28] = ./outputs/gre_boston_m1_3_rot90.dat
M1[29] = ./outputs/gre_boston_m1_4_rot90.dat

[TISSUE_PARAMETERS]
T1 = 10000.0
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35 changes: 30 additions & 5 deletions inputs/boston/Boston_se.ini
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,36 @@
PARENT_CONFIG = Boston.ini

[FILES]
M1[0] = ./outputs/se_boston_m1_0.dat
M1[1] = ./outputs/se_boston_m1_1.dat
M1[2] = ./outputs/se_boston_m1_2.dat
M1[3] = ./outputs/se_boston_m1_3.dat
M1[4] = ./outputs/se_boston_m1_4.dat
M1[0] = ./outputs/se_boston_m1_0_rot00.dat
M1[1] = ./outputs/se_boston_m1_1_rot00.dat
M1[2] = ./outputs/se_boston_m1_2_rot00.dat
M1[3] = ./outputs/se_boston_m1_3_rot00.dat
M1[4] = ./outputs/se_boston_m1_4_rot00.dat
M1[5] = ./outputs/se_boston_m1_0_rot18.dat
M1[6] = ./outputs/se_boston_m1_1_rot18.dat
M1[7] = ./outputs/se_boston_m1_2_rot18.dat
M1[8] = ./outputs/se_boston_m1_3_rot18.dat
M1[9] = ./outputs/se_boston_m1_4_rot18.dat
M1[10] = ./outputs/se_boston_m1_0_rot36.dat
M1[11] = ./outputs/se_boston_m1_1_rot36.dat
M1[12] = ./outputs/se_boston_m1_2_rot36.dat
M1[13] = ./outputs/se_boston_m1_3_rot36.dat
M1[14] = ./outputs/se_boston_m1_4_rot36.dat
M1[15] = ./outputs/se_boston_m1_0_rot54.dat
M1[16] = ./outputs/se_boston_m1_1_rot54.dat
M1[17] = ./outputs/se_boston_m1_2_rot54.dat
M1[18] = ./outputs/se_boston_m1_3_rot54.dat
M1[19] = ./outputs/se_boston_m1_4_rot54.dat
M1[20] = ./outputs/se_boston_m1_0_rot72.dat
M1[21] = ./outputs/se_boston_m1_1_rot72.dat
M1[22] = ./outputs/se_boston_m1_2_rot72.dat
M1[23] = ./outputs/se_boston_m1_3_rot72.dat
M1[24] = ./outputs/se_boston_m1_4_rot72.dat
M1[25] = ./outputs/se_boston_m1_0_rot90.dat
M1[26] = ./outputs/se_boston_m1_1_rot90.dat
M1[27] = ./outputs/se_boston_m1_2_rot90.dat
M1[28] = ./outputs/se_boston_m1_3_rot90.dat
M1[29] = ./outputs/se_boston_m1_4_rot90.dat

[TISSUE_PARAMETERS]
T1 = 10000.0
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35 changes: 30 additions & 5 deletions inputs/boston/Boston_ssfp.ini
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,36 @@
PARENT_CONFIG = Boston.ini

[FILES]
M1[0] = ./outputs/ssfp_boston_m1_0.dat
M1[1] = ./outputs/ssfp_boston_m1_1.dat
M1[2] = ./outputs/ssfp_boston_m1_2.dat
M1[3] = ./outputs/ssfp_boston_m1_3.dat
M1[4] = ./outputs/ssfp_boston_m1_4.dat
M1[0] = ./outputs/ssfp_boston_m1_0_rot00.dat
M1[1] = ./outputs/ssfp_boston_m1_1_rot00.dat
M1[2] = ./outputs/ssfp_boston_m1_2_rot00.dat
M1[3] = ./outputs/ssfp_boston_m1_3_rot00.dat
M1[4] = ./outputs/ssfp_boston_m1_4_rot00.dat
M1[5] = ./outputs/ssfp_boston_m1_0_rot18.dat
M1[6] = ./outputs/ssfp_boston_m1_1_rot18.dat
M1[7] = ./outputs/ssfp_boston_m1_2_rot18.dat
M1[8] = ./outputs/ssfp_boston_m1_3_rot18.dat
M1[9] = ./outputs/ssfp_boston_m1_4_rot18.dat
M1[10] = ./outputs/ssfp_boston_m1_0_rot36.dat
M1[11] = ./outputs/ssfp_boston_m1_1_rot36.dat
M1[12] = ./outputs/ssfp_boston_m1_2_rot36.dat
M1[13] = ./outputs/ssfp_boston_m1_3_rot36.dat
M1[14] = ./outputs/ssfp_boston_m1_4_rot36.dat
M1[15] = ./outputs/ssfp_boston_m1_0_rot54.dat
M1[16] = ./outputs/ssfp_boston_m1_1_rot54.dat
M1[17] = ./outputs/ssfp_boston_m1_2_rot54.dat
M1[18] = ./outputs/ssfp_boston_m1_3_rot54.dat
M1[19] = ./outputs/ssfp_boston_m1_4_rot54.dat
M1[20] = ./outputs/ssfp_boston_m1_0_rot72.dat
M1[21] = ./outputs/ssfp_boston_m1_1_rot72.dat
M1[22] = ./outputs/ssfp_boston_m1_2_rot72.dat
M1[23] = ./outputs/ssfp_boston_m1_3_rot72.dat
M1[24] = ./outputs/ssfp_boston_m1_4_rot72.dat
M1[25] = ./outputs/ssfp_boston_m1_0_rot90.dat
M1[26] = ./outputs/ssfp_boston_m1_1_rot90.dat
M1[27] = ./outputs/ssfp_boston_m1_2_rot90.dat
M1[28] = ./outputs/ssfp_boston_m1_3_rot90.dat
M1[29] = ./outputs/ssfp_boston_m1_4_rot90.dat

[TISSUE_PARAMETERS]
T1 = 2.2
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