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1. open2c/pairtools open2c/pairtools Public

   Extract 3D contacts (.pairs) from sequencing alignments

   Python 104 32

2. open2c/open2c_examples open2c/open2c_examples Public

   Jupyter Notebook 17 9

3. open2c/cooltools open2c/cooltools Public

   The tools for your .cool's

   Jupyter Notebook 140 51

4. RedClib RedClib Public

   Red-C data processing

   Nextflow 13 2

5. fontanka fontanka Public

   Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling fountains from cool Hi-C files.

   Python 8

6. guma44/GEOparse guma44/GEOparse Public

   Python library to access Gene Expression Omnibus Database (GEO)

   Jupyter Notebook 144 52