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afamiliar/README.md

Hi 👋 My name is Ariana Familiar

Senior Data Scientist & Technical Lead at the Children's Hospital of Philadelphia (CHOP)

Real-time diagnostics and AI/ML-based analytics in healthcare is currently met with significant challenges in scalability, generalizability, and accessibility of data, platforms and tools. My mission is to break-down these silos by developing large-scale data repositories and cloud-based workflows that ultimately result in an efficient and streamlined end-to-end data lifecycle. In parallel with this I utilize this data and high-compute infrastructure to develop predictive models that can be translated back to the hospital and leveraged by clinicians to advance patient treatments and outcomes. This work is primarily based in pediatric neuro-oncology and neuro-radiology (brain cancer in children), and utilizes Radiology imaging data (brain scans) and their combination with other -omic and clinical data types. I have a PhD in Cognitive Neuroscience (Univ of Pennsylvania) and a passion for all things big data, AI/ML, and brain imaging.

  • 🌍 I'm based in Philadelphia

Skills

Python PostgreSQL

Socials

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  1. d3b-center/peds-brain-seg-pipeline-public d3b-center/peds-brain-seg-pipeline-public Public

    Preprocessing and automatic tumor segmentation for pediatric brain tumor subjects

    3 1

  2. d3b-center/fw-deepliif-predict d3b-center/fw-deepliif-predict Public

    Flywheel gear to implement DeepLIIF for IHC images

    Python

  3. d3b-center/r-shiny-imaging-data-metrics d3b-center/r-shiny-imaging-data-metrics Public

    R Shiny App to query Flywheel data based on various clinical, scanner, and image properties, exports results to local file

    R

  4. cbtn_learning_lab cbtn_learning_lab Public

    Course materials for 2024 CBTN Summit learning lab

    Jupyter Notebook

  5. pathology-nuclei-seg-workflow pathology-nuclei-seg-workflow Public

    Workflow to prep digital pathology slides for research projects

    Groovy

  6. d3b-center/pediatric-auto-defacer-public d3b-center/pediatric-auto-defacer-public Public

    Release of pretrained pediatric de-facing model for MRI file de-identification

    1