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Fixing issues with traversal to non singular extension containers (in… #3837

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Fixing issues with traversal to non singular extension containers (in…

Fixing issues with traversal to non singular extension containers (in… #3837

Triggered via push January 9, 2025 02:58
@piotrszulpiotrszul
pushed b5e35eb
issue/1759
Status Failure
Total duration 10m 28s
Artifacts 7

test.yml

on: push
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FHIR server (tranche 1)
8m 20s
FHIR server (tranche 1)
FHIR server (tranche 2)
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FHIR server (tranche 2)
FHIR server (tranche 3)
3s
FHIR server (tranche 3)
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Docker image
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5m 45s
Python API
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45s
JavaScript client
Import lambda
53s
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65 errors and 16 warnings
FHIR server (tranche 3)
Credentials could not be loaded, please check your action inputs: Could not load credentials from any providers
R API
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v2`. Learn more: https://github.blog/changelog/2024-02-13-deprecation-notice-v1-and-v2-of-the-artifact-actions/
Docker image
Process completed with exit code 1.
Python API
Process completed with exit code 1.
ManifestConverterTest.convertsManifest: fhir-server/src/test/java/au/csiro/pathling/security/ga4gh/ManifestConverterTest.java#L126
Cannot invoke "org.apache.spark.sql.Dataset.col(String)" because "dataset" is null
AsyncTest.asyncExtract: fhir-server/src/test/java/au/csiro/pathling/test/integration/AsyncTest.java#L84
expected: <202 ACCEPTED> but was: <500 INTERNAL_SERVER_ERROR>
CachedSearchTest.searchWithNoFilter: fhir-server/src/test/java/au/csiro/pathling/test/integration/CachedSearchTest.java#L57
expected: <true> but was: <false>
CapabilityStatementTest.capabilityStatement: fhir-server/src/test/java/au/csiro/pathling/test/integration/CapabilityStatementTest.java#L61
rest[mode=server].resource[]: Expected 141 values but got 142
ExtractTest.extract: fhir-server/src/test/java/au/csiro/pathling/test/integration/ExtractTest.java#L91
Failed to load resource from : 'responses/ExtractTest/extract.csv'
MultipleAggregationsAndResolveTest.multipleAggregationsAndResolve: fhir-server/src/test/java/au/csiro/pathling/test/integration/MultipleAggregationsAndResolveTest.java#L68
Expected: parameter but none found
MultipleAggregationsAndResolveTest.multipleAggregationsAndResolveWithGroupings: fhir-server/src/test/java/au/csiro/pathling/test/integration/MultipleAggregationsAndResolveTest.java#L80
Expected: parameter but none found
SearchTest.searchWithNoFilter: fhir-server/src/test/java/au/csiro/pathling/test/integration/SearchTest.java#L62
expected: <true> but was: <false>
FHIR server (tranche 2)
There were 8 failed tests
AggregateQueryExecutorTest.simpleQueryWithNoLabels: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryExecutorTest.java#L120
expected: <[[]:2]> but was: <[]>
AggregateQueryExecutorTest.simpleQueryWithLabels: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryExecutorTest.java#L99
array lengths differ, expected: <2> but was: <0>
AggregateQueryTest.queryMultipleGroupingCounts: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L229
Expected: parameter but none found
AggregateQueryTest.queryWithLargeScaleDecimalResult: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L574
Expected: parameter but none found
AggregateQueryTest.queryWithWhereInAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L383
Expected: parameter but none found
AggregateQueryTest.queryWithNonSingularWhereFollowedByCount: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L509
Expected: parameter but none found
AggregateQueryTest.queryWithNestedAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L398
Expected: parameter but none found
AggregateQueryTest.queryWithCombineResultInSecondFilter: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L604
Expected: parameter but none found
AggregateQueryTest.simpleQuery: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L58
Expected: parameter but none found
AggregateQueryTest.queryWithReverseResolveAndCounts: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L212
Expected: parameter but none found
AggregateQueryTest.queryWithIntegerGroupings: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L108
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAsComparisonOperand: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L318
Expected: parameter but none found
AggregateQueryTest.queryWithAmbiguousSelfJoin: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L335
Expected: parameter but none found
AggregateQueryTest.queryMultipleCountAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L245
Expected: parameter but none found
AggregateQueryTest.queryWithUriValueInGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L427
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndMembership: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L351
Expected: parameter but none found
AggregateQueryTest.queryWithLiteralAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L463
Expected: parameter but none found
AggregateQueryTest.queryWithMultipleGroupingsAndMembership: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L494
Expected: parameter but none found
AggregateQueryTest.queryWithComparisonInAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L445
Expected: parameter but none found
AggregateQueryTest.queryWithReverseResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L197
Expected: parameter but none found
AggregateQueryTest.queryWithNonSingularBooleanGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L532
Expected: parameter but none found
AggregateQueryTest.queryWithMemberOf: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L286
Expected: parameter but none found
AggregateQueryTest.queryWithDateComparison: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L153
Expected: parameter but none found
AggregateQueryTest.queryWithPolymorphicResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L182
Expected: parameter but none found
AggregateQueryTest.queryWithChoiceElement: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L138
Expected: parameter but none found
AggregateQueryTest.queryWithMultipleTrivialAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L619
Expected: parameter but none found
AggregateQueryTest.queryWithNestedAggregationAndNoGroupings: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L412
Expected: parameter but none found
AggregateQueryTest.queryWithWhere: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L261
Expected: parameter but none found
AggregateQueryTest.queryWithCanonicalGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L561
Expected: parameter but none found
AggregateQueryTest.queryWithDateTimeGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L300
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndBoolean: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L367
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndGroupedData: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L478
Expected: parameter but none found
AggregateQueryTest.queryWithResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L168
Expected: parameter but none found
AggregateQueryTest.multipleAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L92
Expected: parameter but none found
AggregateQueryTest.multipleGroupingsAndAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L76
Expected: parameter but none found
AggregateQueryTest.queryWithBracketing: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L547
Expected: parameter but none found
AggregateQueryTest.queryWithMathExpression: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L123
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAggregationAndCount: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L588
Expected: parameter but none found
ExtractQueryTest.whereInMultipleColumns: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L317
expected: <[[bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,e993ce4e-4cb9-4e7c-b082-a9144e9efb03,999-38-1164]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,0dc85075-4f59-4e4f-b75d-a2f601d0cf24,999-21-1297]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,2cc8ffdd-6233-4dd4-ba71-36eccb8204e2,999-43-1135]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,2f9fd91d-9096-40e8-8307-825f68780599,999-42-8004]:1, [9360820c-8602-4335-8b50-c88d627a0c20,eb4458b4-cfda-463e-ba15-eaad8d291d1d,999-23-9134]:1, [121503c8-9564-4b48-9086-a22df717948e,f34e77c9-df31-49c4-92e2-e871fa76026e,999-77-4115]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,11fd8dbd-dd20-479f-b82b-558fed60bae7,999-14-8633]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,3d67a22e-4e26-4d7a-a586-ea79114faa50,999-36-4411]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,1f276fc3-7e91-4fc9-a287-be19228e8807,999-56-3056]:1]> but was: <[[beff242e-580b-47c0-9844-c1a68c36c5bf,null,999-56-3056]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,11fd8dbd-dd20-479f-b82b-558fed60bae7,null]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,1f276fc3-7e91-4fc9-a287-be19228e8807,null]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,null,null]:3, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null,null]:3, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null,999-14-8633]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null,999-42-8004]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null,null]:3, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null,999-21-1297]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null,null]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null,999-38-1164]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null,999-43-1135]:1, [121503c8-9564-4b48-9086-a22df717948e,null,null]:3, [a7eb2ce7-1075-426c-addd-957b861b0e55,null,999-36-4411]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null,null]:3, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,e993ce4e-4cb9-4e7c-b082-a9144e9efb03,null]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,2f9fd91d-9096-40e8-8307-825f68780599,null]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,2cc8ffdd-6233-4dd4-ba71-36eccb8204e2,null]:1, [9360820c-8602-4335-8b50-c88d627a0c20,null,null]:3, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,0dc85075-4f59-4e4f-b75d-a2f601d0cf24,null]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,null,null]:3, [121503c8-9564-4b48-9086-a22df717948e,f34e77c9-df31-49c4-92e2-e871fa76026e,null]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null,null]:3, [121503c8-9564-4b48-9086-a22df717948e,null,999-77-4115]:1, [9360820c-8602-4335-8b50-c88d627a0c20,eb4458b4-cfda-463e-ba15-eaad8d291d1d,null]:1, [9360820c-8602-4335-8b50-c88d627a0c20,null,999-23-9134]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,3d67a22e-4e26-4d7a-a586-ea79114faa50,null]:1]>
ExtractQueryTest.multipleIndependentUnnestings: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L369
expected: <[[8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://snomed.info/sct,87915002]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://snomed.info/sct,87915002]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1]> but was: <[[e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://snomed.info/sct,87915002]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,87915002]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://snomed.info/sct,M]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://snomed.info/sct,87915002]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,87915002]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://snomed.info/sct,M]:1]>
ExtractQueryTest.simpleQueryWithAliases: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L117
expected: <[[e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,8]:1, [121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,10]:1, [9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,16]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,5]:1]> but was: <[[7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,1]:5, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,1]:8, [9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,1]:32, [121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,1]:10]>
ExtractQueryTest.resolveAndCodingLiteralColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L203
[UNSUPPORTED_DATA_TYPE_FOR_DATASOURCE] The CSV datasource doesn't support the column `@v3cad3` of the type "STRUCT<id: STRING, system: STRING, version: STRING, code: STRING, display: STRING, userSelected: BOOLEAN, _fid: INT>".
ExtractQueryTest.combineWithUnequalCardinalities: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L504
expected: <[[7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Cherryl901]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,MacGyver246]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Wuckert783]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Pedro316]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Ophelia894]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Oberbrunner298]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Heller342]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,Gilberto712]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Su690]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Botsford977]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Karina848]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Gleichner915]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Ulibarri312]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Ebert178]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Krajcik437]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Shirley182]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Guy979]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Karina848]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Seymour882]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Towne435]:1]> but was: <[[7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Cherryl901]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,MacGyver246]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Wuckert783]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Wuckert783]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Pedro316]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Ophelia894]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Oberbrunner298]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Heller342]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,Gilberto712]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Su690]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Botsford977]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Karina848]:2, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Gleichner915]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Ulibarri312]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Oberbrunner298]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Ebert178]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Krajcik437]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Shirley182]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Guy979]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Karina848]:2, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Seymour882]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Towne435]:1]>
ExtractQueryTest.multipleNonSingularColumnsWithDifferentTypes: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L333
[UNSUPPORTED_DATA_TYPE_FOR_DATASOURCE] The CSV datasource doesn't support the column `@dn2a6v` of the type "STRUCT<id: STRING, system: STRING, version: STRING, code: STRING, display: STRING, userSelected: BOOLEAN, _fid: INT>".
ExtractQueryTest.limit: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L270
expected: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]> but was: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]>
ExtractQueryTest.multiplePolymorphicResolves: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L172
expected: <[[2c67dbd4-0609-43d3-be6b-e88220c77b75,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [807ac3db-8499-4876-8508-7839776afc9a,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [5be1aab8-ecae-4c29-8f55-fe37535fd2c6,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [7e490679-3095-4431-95be-d3d9eb3b40f8,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [2540bf5e-5bc9-48be-8e66-37a2358ae75d,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [d19f556d-976c-4529-a2ae-f465b489503c,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [335f8324-ce20-4ebc-a00c-ae085c4516b7,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [f8bb88e4-6301-4eab-83b8-f49c72bb448f,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [a0fcef9d-b5bf-4930-b520-cf2dee3b9341,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [19113926-d487-42fe-82f6-5c9a75ee4d26,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [4d79c3df-899d-42a4-b17d-e93770921d6b,2b36c1e2-bbe1-45ae-8124-4adad2677702,male,Pedro316,Ulibarri312]:1, [8b05436f-e4ea-4f8e-85ff-4ce195645c0e,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [91faf3db-94ce-4508-87d2-206b19ba0302,beff242e-580b-47c0-9844-c1a68c36c5bf,male,Guy979,Towne435]:1, [69ea0b24-7d91-4498-991f-49f4b07914c0,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [ad2dceaf-b8e6-49a0-952c-bcda78fc7b0b,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [d2353195-134f-44f1-835c-d0801a8f31b2,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [13c95f69-822b-44c6-ada3-d73aa1466290,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [c98f9644-7da9-4fc4-bf4d-5da3df697616,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [6b9ffc9c-80b0-40c2-8cf7-f4d51b5448ab,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [f4ae2f38-086a-450a-bd38-8460ee704763,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [6017f9b9-36a1-4cc2-a0ae-af31dc92b089,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [69ea0b24-7d91-4498-991f-49f4b07914c0,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [37af6887-b8ba-480d-bb1c-4409711b8e2f,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [304a8806-48e6-4d35-bb17-121f1190b475,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [fd73b5ca-079f-47a5-90b1-e49a547d1554,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [ba99aa15-c5a4-48e9-9858-df6a8c4a53d2,7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,Heller342]:1, [0f1004c8-e9e9-477d-8c43-1eddc445664d,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [df0e5bbc-9657-4e73-bfbc-0a92ae5da74d,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [c3034cd6-9395-4b50-b14b-e457b4077e23,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [31b93f2e-caa4-4a7f-82ca-5b59f1fc2fdd,2b36c1e2-bbe1-45ae-8124-4adad2677702,male,Pedro316,Ulibarri312]:1, [22d20864-b7f9-44f6-88e3-6c3db215eb9a,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [2d4189ac-8eb3-4f4a-9bb1-0f754d715aee,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [113e8a00-6fd2-489c-867b-6eedf314c774,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [80b37d35-ee1e-49ff-82d3-6e10b0798fd6,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [c98f9644-7da9-4fc4-bf4d-5da3df697616,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [b566351c-0d0f-49a8-b7f0-063975f0ea43,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [ddefa5f2-0d73-4a62-a938-920ee87f7d66,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [bc243663-b435-43a0-912f-40a6f3bfcc2b,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [2d19750d-c270-4be9-a84a-ddcdbb64085a,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [9404f7b4-1c0c-4e87-b71f-ff267d0552e6,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [c6fbf259-f45f-4266-b988-4b568b8c36c2,bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,male,Gilberto712,MacGyver246]:1, [2e2cebf2-8c0e-4a89-8139-c2b233343dd7,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [9ce65331-faf8-477a-b338-25678919973b,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [dad66b19-6c91-4513-aa29-abd08fa256cf,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [0d8d0441-a4ad-4f15-bc61-5d9694ed3d48,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [113e8a00-6fd2-489c-867b-6eedf314c774,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [76b9935f-b44e-42b6-a991-e2e724b42334,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Arianne,Burchard]:1, [5eaf7eae-ffb9-44ec-8d46-fa2b87bedefc,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [35a7f624-22be-48b3-b82c-45cf2667c527,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [45407705-2b60-4788-981b-8090026f3b0b,beff242e-580b-47c0-9844-c1a68c36c5bf,male,Guy979,Towne435]:1, [5e7b39f8-773d-4ffb-83e1-735923586881,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [fd73b5ca-079f-47a5-90b1-e49a547d1554,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [13a2e7a0-1cf8-475f-8065-6d03b6538c9a,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [432d6af2-0c59-420e-9434-9b416fb36a85,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [b64a7247-1000-4701-8771-caa6252cc905,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [76b9935f-b44e-42b6-a991-e2e724b42334,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [020acef9-0421-46b1-9289-92cdc59c30ca,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [10321ec0-3613-4741-a9c3-47bafbc3fae4,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [cdd25034-c562-4788-aa9e-e53d8006bcbd,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [53bf45a8-d83f-429c-9b91-26b086a405ea,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [ad7d9189-d6b1-4e98-9900-af4bcb9e50b8,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [764a0e55-a10a-4d19-aa18-d414cb911a8d,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [791b93c5-dfab-4a85-a810-5b01b3531c09,7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,Heller342]:1, 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[f9994712-1f5e-4a3b-9d64-369b1e3e8f4b,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [1ec37957-06f7-4de5-aa2c-1dc9d02e1ddd,beff242e-580b-47c0-9844-c1a68c36c5bf,male,Guy979,Towne435]:1, [b566351c-0d0f-49a8-b7f0-063975f0ea43,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:2, [84a1a6b4-583f-4525-b048-d676da5d7533,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:2]>
ExtractQueryTest.codingColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L218
[UNSUPPORTED_DATA_TYPE_FOR_DATASOURCE] The CSV datasource doesn't support the column `@b5ggkr` of the type "STRUCT<id: STRING, system: STRING, version: STRING, code: STRING, display: STRING, userSelected: BOOLEAN, _fid: INT>".
ExtractQueryTest.eliminatesTrailingNulls: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L285
expected: <[[8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null]:1, [121503c8-9564-4b48-9086-a22df717948e,null]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null]:1, [9360820c-8602-4335-8b50-c88d627a0c20,72892002]:2, [beff242e-580b-47c0-9844-c1a68c36c5bf,null]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,null]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null]:1]> but was: <[[8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null]:8, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null]:8, [121503c8-9564-4b48-9086-a22df717948e,null]:10, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null]:3, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null]:5, [9360820c-8602-4335-8b50-c88d627a0c20,null]:14, [9360820c-8602-4335-8b50-c88d627a0c20,72892002]:2, [beff242e-580b-47c0-9844-c1a68c36c5bf,null]:3, [a7eb2ce7-1075-426c-addd-957b861b0e55,null]:8, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null]:10]>
ExtractQueryTest.multipleResolves: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L136
expected: <[[308eba53-29fa-489a-97dc-741b077841a7,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [21995497-0eb8-4c0b-8c23-e6a829f3d596,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [f6d3ff7b-f6e1-416a-bb05-73dfa8d129b5,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [fcc916dd-5e4f-4bf7-9aef-c906a36d7301,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [bbd0f936-0cb9-4cc9-858c-2926b2b1c1eb,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [4cc605d0-d0c6-4de3-849a-f5f92b35d2a0,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [e1040d58-53bc-4467-8101-ca53b772cede,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [cdb8493c-e3b0-447f-b16b-e58dd64660f3,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [12b212d8-bc6e-415a-93b0-594381726668,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [721e4027-a080-40d8-bc4a-43cd33477611,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [6a5d8a68-bbe0-4408-ada5-a843ee6bd9b0,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [56999896-e36b-4e63-a6b6-dbb85dfe1936,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [0134901a-4a69-4b39-92ea-d6f48ec83c6e,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [f883f2ca-d523-4c9f-86b2-0add137901de,ff9863d3-3fa3-3861-900e-f00148f5d9c2,SHRINERS' HOSPITAL FOR CHILDREN - BOSTON, THE]:1, [96b2282d-1384-4cfb-9958-f009fb501626,4f3a530e-a2f7-3de0-9a09-c0a70a9ab894,BERKSHIRE MEDICAL CENTER INC - 1,01201]:1, [8e9e848c-0547-4f2c-8b5f-e33d79bbed67,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [b1d4dc41-07ae-44db-ae17-1df86c5a62cf,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [cf67a8d4-48e2-4dc9-a521-6aabcff0330b,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [f3eb0c38-2571-44e7-be39-732eb52cf1df,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [f29330d0-5b32-4f75-b558-a1c7f05c0b4a,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [add6d754-a075-4693-a33a-c061c9a368ff,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [39efc9b8-a75f-43a3-98a2-5bdc1c8207d2,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [e8c41168-a093-40eb-8baa-6802d24f554a,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [50eac25a-3761-4de3-8a69-aae52e658300,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [48cc2275-a478-4ade-b076-cf38e1d16017,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [a6cb423a-7571-46df-83e2-ccc6820adb36,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [2bd766e5-60e4-4469-bb97-54f0503a1eb0,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [6af73cae-2e4e-485f-a74d-6f4307eb3af3,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [900ce9fe-02d3-476b-902a-9467767ecdcf,c1c433e1-9ed4-3730-bd86-d25de4fa96bf,MASSACHUSETTS GENERAL PHYSICIANS ORGANIZATION, INC]:1, [d90676d2-ce74-4867-a00f-6dbffa7c00be,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [2de1f829-c9d2-4f22-bf39-536dcb82fc3e,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [2d2e07ec-e697-4384-a679-867e93740921,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [3397a796-894d-409c-97de-a9e6f3f88198,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [7f410064-638a-4477-85c4-97fc2bb14a49,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [224e538d-3622-4f5e-b772-211ed358d8de,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [45b25ced-6eed-4fca-8ec1-b7d32ea13efe,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [b7772635-1801-48e4-a442-f4aaa6860544,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [ca7f269d-3794-4994-8c46-d8e9f2aa6378,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [102e16c5-4920-4dad-b142-0b280b2aacad,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [72c611bb-471e-40f2-a6a8-0ae7b7b6b63e,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [374fd699-6b74-4500-9d60-2473c7e0364f,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [984067fc-3dfc-47b7-8ee0-4d9b27d43860,0f7f97f6-693c-3de9-8190-85feaf4632e2,CONCENTRA URGENT CARE - EAST BOSTON,2128]:1, [d7a48a26-7731-4046-bf22-78f0b8084eb9,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [f1293c5e-c997-4ba9-8bfd-438e7a840dc8,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [c3ec1f2e-1411-41e4-8370-acd5a8f68cf4,8b58cdd1-3d79-3126-8fe0-da2c54d6805c,CARNEY HOSPITAL,02124]:1, [a6b084fb-ada7-480a-9adc-f180d4eb1e2a,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [836b2e59-fb97-4014-ab0c-d5a5dc750969,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [62059efc-7607-41c9-a3ba-70948f6a8a1d,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [baf48725-f0f9-4357-a71d-b1104910deae,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [b07fb98d-2da4-423a-83b4-7a673de93096,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [85e41a01-04e5-44d2-8b3a-4d3ad7b0f87b,ff9863d3-3fa3-3861-900e-f00148f5d9c2,SHRINERS' HOSPITAL FOR CHILDREN - BOSTON, THE]:1, [395019b6-84e8-4919-8b8b-ac64e4a6eade,08bcda9c-f8c8-3244-82d4-fc306a7a55d3,BOSTON MEDICAL CENTER CORPORATION-,02118]:1, [7e7322a6-7912-4101-b3be-d134245a0626,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [85c997bf-63d9-4ebb-8e0b-320de3dddc6c,e78cfad6-cc68-393f-bc00-ba462d78ad71,NORTH SUFFOLK MENTAL HEALTH ASSOCIATION, INC.]:1, [ae9e663e-8c15-43c9-8a88-52b61cbf07a9,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [23780032-f3bb-4b40-af2e-3fa6b1677376,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [bf895c48-1d52-4780-8e9a-532d69356d28,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [359cb842-c25b-429f-ba9b-d52f171e5631,ff9863d3-3fa3-3861-900e-f00148f5d9c2,SHRINERS' HOSPITAL FOR CHILDREN - BOSTON, THE]:1, [4e6b69c7-61f9-4ff5-8c33-ad400edb9b06,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [f2c9ca81-8b1e-4873-bd8a-1a6e1411193c,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [fc4d37ec-22b7-4ea0-a34e-dcd4beb2001c,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [d05461d6-13bf-402c-890d-db6404933f7c,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [ca3e0486-fd6b-4a13-a741-3a47760b412d,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [5f64131b-d410-449a-9de6-35415919fec5,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [b00df815-7528-4967-bfe2-311130d91c21,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [16d280a2-c61f-487f-9034-22e884158969,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [4506aa76-9d0d-40e4-85bc-5735f74522a0,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [c892b1d7-7485-407d-8883-54fb7fecebc1,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [e1c2ad9f-6f61-4f16-805a-2f405b63659a,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [4a464bb5-9373-4f1b-9c03-053c64797114,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [dfe38e2d-23d5-45c6-86bd-f83fe3b6a1d8,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [def5fd23-2b74-4c64-85e9-fac27e626bb7,4f3a530e-a2f7-3de0-9a09-c0a70a9ab894,BERKSHIRE MEDICAL CENTER INC - 1,01201]:1, [21c6e0fc-bf47-4f80-b1ff-85b940445bdf,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [b0d337c5-3555-4817-ba59-4ceea5ad8a91,36c06fcd-daf1-3e5f-869c-f0af0809c8c4,PCP149432,02148-7028]:1, [2ee2ab26-09fb-4e12-bf21-9fed3b4c38de,e78cfad6-cc68-393f-bc00-ba462d78ad71,NORTH SUFFOLK MENTAL HEALTH ASSOCIATION, INC.]:1, [749babeb-6883-4bd4-92a5-bec52769071c,235b2155-9bbb-3632-9bf7-858ca62a6f25,PCP11768,02043-1743]:1, [f3c2f842-6aa3-42c9-a0f3-895c40456868,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [f18b08bd-40da-43c1-87ec-4ba23542635f,c1c433e1-9ed4-3730-bd86-d25de4fa96bf,MASSACHUSETTS GENERAL PHYSICIANS ORGANIZATION, INC]:1, [b5d06aa6-b5c6-4782-a0f8-dbf4121e1baa,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [922e2443-9cc5-421f-8310-9cd23f6e9f2d,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [6d47a2fe-3645-4c5c-bebe-1b822eff197f,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [41d26b1c-57b9-408c-b955-bf0ee1db4809,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [1f3443ee-d15e-4894-b18e-185cfadfcdea,c1c433e1-9ed4-3730-bd86-d25de4fa96bf,MASSACHUSETTS GENERAL PHYSICIANS ORGANIZATION, INC]:1, [3ddf46fe-b5be-456d-810f-ea6a7402236d,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [a221198d-000e-497b-8b70-bb4d37f7bbe1,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [0364073f-91d8-47a1-b8b0-107c6318a691,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, 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AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [6e187f47-91a1-4217-a185-31b6f01db225,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [11dafd5c-85e7-4275-a147-89a63641e35e,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [777aa5f2-2a09-4aed-92ea-912694e28b48,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [36160225-76a2-4cf1-8bf8-5a3d3f2ec9d7,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [acb2329d-b1c3-45c3-ad28-91a09aa521e1,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [e4358f28-62a8-4e06-b2bd-cb00d3310349,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [01ac1476-0c9c-4cd7-82a6-4ff526018e9a,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [5e1fe0f2-4517-462b-8287-7824f9a60f4f,62fa9127-485f-3032-87cc-6576d91fec94,LAHEY CLINIC NORTHSHORE,1960]:1, [42aa48c7-68cc-4bee-9730-cff29f0e36c5,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL 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ExtractQueryTest.multipleFilters: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L253
expected: <[[121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,10]:1, [9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,16]:1]> but was: <[[9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,1]:32, [121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,1]:10]>
FHIR server (tranche 1)
There were 55 failed tests
Site
Process completed with exit code 1.
Site
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
R API
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
FHIR server (tranche 3)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
R API
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
JavaScript client
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Import lambda
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Python API
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Encoders
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Encoders
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
FHIR server (tranche 2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 2)
No files were found with the provided path: fhir-server/target/timing.log. No artifacts will be uploaded.
FHIR server (tranche 2)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
FHIR server (tranche 1)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 1)
No files were found with the provided path: fhir-server/target/timing.log. No artifacts will be uploaded.
FHIR server (tranche 1)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
Site
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Artifacts

Produced during runtime
Name Size
encoders-coverage
32 KB
encoders-surefire-reports
58.2 KB
fhir-server-1-coverage
98 KB
fhir-server-1-surefire-reports
173 KB
fhir-server-2-coverage
98.9 KB
fhir-server-2-surefire-reports
222 KB
import-lambda
19.6 MB