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Connecting the resolving FHIR evaluator to extract query executor imp… #3834

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Connecting the resolving FHIR evaluator to extract query executor imp…

Connecting the resolving FHIR evaluator to extract query executor imp… #3834

Triggered via push January 8, 2025 00:48
@piotrszulpiotrszul
pushed 15d2569
issue/1759
Status Failure
Total duration 9m 25s
Artifacts 7

test.yml

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FHIR server (tranche 1)
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FHIR server (tranche 1)
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FHIR server (tranche 3)
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FHIR server (tranche 3)
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64 errors and 16 warnings
R API
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v2`. Learn more: https://github.blog/changelog/2024-02-13-deprecation-notice-v1-and-v2-of-the-artifact-actions/
FHIR server (tranche 3)
Credentials could not be loaded, please check your action inputs: Could not load credentials from any providers
Docker image
Process completed with exit code 1.
Site
Process completed with exit code 1.
Python API
Process completed with exit code 1.
AsyncTest.asyncExtract: fhir-server/src/test/java/au/csiro/pathling/test/integration/AsyncTest.java#L84
expected: <202 ACCEPTED> but was: <500 INTERNAL_SERVER_ERROR>
CachedSearchTest.searchWithNoFilter: fhir-server/src/test/java/au/csiro/pathling/test/integration/CachedSearchTest.java#L57
expected: <true> but was: <false>
CapabilityStatementTest.capabilityStatement: fhir-server/src/test/java/au/csiro/pathling/test/integration/CapabilityStatementTest.java#L61
rest[mode=server].resource[]: Expected 141 values but got 142
ExtractTest.extract: fhir-server/src/test/java/au/csiro/pathling/test/integration/ExtractTest.java#L91
Failed to load resource from : 'responses/ExtractTest/extract.csv'
MultipleAggregationsAndResolveTest.multipleAggregationsAndResolve: fhir-server/src/test/java/au/csiro/pathling/test/integration/MultipleAggregationsAndResolveTest.java#L68
Expected: parameter but none found
MultipleAggregationsAndResolveTest.multipleAggregationsAndResolveWithGroupings: fhir-server/src/test/java/au/csiro/pathling/test/integration/MultipleAggregationsAndResolveTest.java#L80
Expected: parameter but none found
SearchTest.searchWithNoFilter: fhir-server/src/test/java/au/csiro/pathling/test/integration/SearchTest.java#L62
expected: <true> but was: <false>
FHIR server (tranche 2)
There were 7 failed tests
AggregateQueryExecutorTest.simpleQueryWithNoLabels: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryExecutorTest.java#L120
expected: <[[]:2]> but was: <[]>
AggregateQueryExecutorTest.simpleQueryWithLabels: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryExecutorTest.java#L99
array lengths differ, expected: <2> but was: <0>
AggregateQueryTest.queryMultipleGroupingCounts: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L229
Expected: parameter but none found
AggregateQueryTest.queryWithLargeScaleDecimalResult: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L574
Expected: parameter but none found
AggregateQueryTest.queryWithWhereInAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L383
Expected: parameter but none found
AggregateQueryTest.queryWithNonSingularWhereFollowedByCount: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L509
Expected: parameter but none found
AggregateQueryTest.queryWithNestedAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L398
Expected: parameter but none found
AggregateQueryTest.queryWithCombineResultInSecondFilter: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L604
Expected: parameter but none found
AggregateQueryTest.simpleQuery: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L58
Expected: parameter but none found
AggregateQueryTest.queryWithReverseResolveAndCounts: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L212
Expected: parameter but none found
AggregateQueryTest.queryWithIntegerGroupings: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L108
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAsComparisonOperand: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L318
Expected: parameter but none found
AggregateQueryTest.queryWithAmbiguousSelfJoin: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L335
Expected: parameter but none found
AggregateQueryTest.queryMultipleCountAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L245
Expected: parameter but none found
AggregateQueryTest.queryWithUriValueInGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L427
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndMembership: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L351
Expected: parameter but none found
AggregateQueryTest.queryWithLiteralAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L463
Expected: parameter but none found
AggregateQueryTest.queryWithMultipleGroupingsAndMembership: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L494
Expected: parameter but none found
AggregateQueryTest.queryWithComparisonInAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L445
Expected: parameter but none found
AggregateQueryTest.queryWithReverseResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L197
Expected: parameter but none found
AggregateQueryTest.queryWithNonSingularBooleanGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L532
Expected: parameter but none found
AggregateQueryTest.queryWithMemberOf: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L286
Expected: parameter but none found
AggregateQueryTest.queryWithDateComparison: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L153
Expected: parameter but none found
AggregateQueryTest.queryWithPolymorphicResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L182
Expected: parameter but none found
AggregateQueryTest.queryWithChoiceElement: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L138
Expected: parameter but none found
AggregateQueryTest.queryWithMultipleTrivialAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L619
Expected: parameter but none found
AggregateQueryTest.queryWithNestedAggregationAndNoGroupings: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L412
Expected: parameter but none found
AggregateQueryTest.queryWithWhere: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L261
Expected: parameter but none found
AggregateQueryTest.queryWithCanonicalGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L561
Expected: parameter but none found
AggregateQueryTest.queryWithDateTimeGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L300
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndBoolean: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L367
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndGroupedData: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L478
Expected: parameter but none found
AggregateQueryTest.queryWithResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L168
Expected: parameter but none found
AggregateQueryTest.multipleAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L92
Expected: parameter but none found
AggregateQueryTest.multipleGroupingsAndAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L76
Expected: parameter but none found
AggregateQueryTest.queryWithBracketing: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L547
Expected: parameter but none found
AggregateQueryTest.queryWithMathExpression: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L123
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAggregationAndCount: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L588
Expected: parameter but none found
ExtractQueryTest.whereInMultipleColumns: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L317
expected: <[[bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,e993ce4e-4cb9-4e7c-b082-a9144e9efb03,999-38-1164]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,0dc85075-4f59-4e4f-b75d-a2f601d0cf24,999-21-1297]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,2cc8ffdd-6233-4dd4-ba71-36eccb8204e2,999-43-1135]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,2f9fd91d-9096-40e8-8307-825f68780599,999-42-8004]:1, [9360820c-8602-4335-8b50-c88d627a0c20,eb4458b4-cfda-463e-ba15-eaad8d291d1d,999-23-9134]:1, [121503c8-9564-4b48-9086-a22df717948e,f34e77c9-df31-49c4-92e2-e871fa76026e,999-77-4115]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,11fd8dbd-dd20-479f-b82b-558fed60bae7,999-14-8633]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,3d67a22e-4e26-4d7a-a586-ea79114faa50,999-36-4411]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,1f276fc3-7e91-4fc9-a287-be19228e8807,999-56-3056]:1]> but was: <[[beff242e-580b-47c0-9844-c1a68c36c5bf,null,999-56-3056]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,11fd8dbd-dd20-479f-b82b-558fed60bae7,null]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,1f276fc3-7e91-4fc9-a287-be19228e8807,null]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,null,null]:3, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null,null]:3, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null,999-14-8633]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null,999-42-8004]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null,null]:3, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null,999-21-1297]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null,null]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null,999-38-1164]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null,999-43-1135]:1, [121503c8-9564-4b48-9086-a22df717948e,null,null]:3, [a7eb2ce7-1075-426c-addd-957b861b0e55,null,999-36-4411]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null,null]:3, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,e993ce4e-4cb9-4e7c-b082-a9144e9efb03,null]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,2f9fd91d-9096-40e8-8307-825f68780599,null]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,2cc8ffdd-6233-4dd4-ba71-36eccb8204e2,null]:1, [9360820c-8602-4335-8b50-c88d627a0c20,null,null]:3, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,0dc85075-4f59-4e4f-b75d-a2f601d0cf24,null]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,null,null]:3, [121503c8-9564-4b48-9086-a22df717948e,f34e77c9-df31-49c4-92e2-e871fa76026e,null]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null,null]:3, [121503c8-9564-4b48-9086-a22df717948e,null,999-77-4115]:1, [9360820c-8602-4335-8b50-c88d627a0c20,eb4458b4-cfda-463e-ba15-eaad8d291d1d,null]:1, [9360820c-8602-4335-8b50-c88d627a0c20,null,999-23-9134]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,3d67a22e-4e26-4d7a-a586-ea79114faa50,null]:1]>
ExtractQueryTest.multipleIndependentUnnestings: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L369
expected: <[[8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://snomed.info/sct,87915002]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://snomed.info/sct,87915002]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1]> but was: <[[e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://snomed.info/sct,87915002]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,87915002]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,M]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://snomed.info/sct,M]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://snomed.info/sct,87915002]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,87915002]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,http://terminology.hl7.org/CodeSystem/v3-MaritalStatus,S]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,http://snomed.info/sct,M]:1]>
ExtractQueryTest.simpleQueryWithAliases: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L117
expected: <[[e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,8]:1, [121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,10]:1, [9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,16]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,5]:1]> but was: <[[7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,1]:5, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,1]:8, [9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,1]:32, [121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,1]:10]>
ExtractQueryTest.resolveAndCodingLiteralColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L203
[UNSUPPORTED_DATA_TYPE_FOR_DATASOURCE] The CSV datasource doesn't support the column `@948wkd` of the type "STRUCT<id: STRING, system: STRING, version: STRING, code: STRING, display: STRING, userSelected: BOOLEAN, _fid: INT>".
ExtractQueryTest.combineWithUnequalCardinalities: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L504
expected: <[[7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Cherryl901]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,MacGyver246]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Wuckert783]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Pedro316]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Ophelia894]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Oberbrunner298]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Heller342]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,Gilberto712]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Su690]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Botsford977]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Karina848]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Gleichner915]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Ulibarri312]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Ebert178]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Krajcik437]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Shirley182]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Guy979]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Karina848]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Seymour882]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Towne435]:1]> but was: <[[7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Cherryl901]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,MacGyver246]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Wuckert783]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Wuckert783]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Pedro316]:1, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Ophelia894]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Oberbrunner298]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,Cherryl901,Heller342,Heller342]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,Gilberto712,MacGyver246,Gilberto712]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Su690]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Botsford977]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Oberbrunner298,Karina848]:2, [121503c8-9564-4b48-9086-a22df717948e,Ophelia894,Gleichner915,Gleichner915]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,Pedro316,Ulibarri312,Ulibarri312]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Oberbrunner298]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,Su690,Ebert178,Ebert178]:1, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Krajcik437]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,Shirley182,Botsford977,Shirley182]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Guy979]:1, [9360820c-8602-4335-8b50-c88d627a0c20,Karina848,Wuckert783,Karina848]:2, [8ee183e2-b3c0-4151-be94-b945d6aa8c6d,Seymour882,Krajcik437,Seymour882]:1, [beff242e-580b-47c0-9844-c1a68c36c5bf,Guy979,Towne435,Towne435]:1]>
ExtractQueryTest.multipleNonSingularColumnsWithDifferentTypes: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L333
[UNSUPPORTED_DATA_TYPE_FOR_DATASOURCE] The CSV datasource doesn't support the column `@ocbeg3` of the type "STRUCT<id: STRING, system: STRING, version: STRING, code: STRING, display: STRING, userSelected: BOOLEAN, _fid: INT>".
ExtractQueryTest.limit: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L270
expected: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]> but was: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]>
ExtractQueryTest.multiplePolymorphicResolves: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L172
expected: <[[2c67dbd4-0609-43d3-be6b-e88220c77b75,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [807ac3db-8499-4876-8508-7839776afc9a,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [5be1aab8-ecae-4c29-8f55-fe37535fd2c6,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [7e490679-3095-4431-95be-d3d9eb3b40f8,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [2540bf5e-5bc9-48be-8e66-37a2358ae75d,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [d19f556d-976c-4529-a2ae-f465b489503c,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [335f8324-ce20-4ebc-a00c-ae085c4516b7,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [f8bb88e4-6301-4eab-83b8-f49c72bb448f,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [a0fcef9d-b5bf-4930-b520-cf2dee3b9341,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [19113926-d487-42fe-82f6-5c9a75ee4d26,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [4d79c3df-899d-42a4-b17d-e93770921d6b,2b36c1e2-bbe1-45ae-8124-4adad2677702,male,Pedro316,Ulibarri312]:1, [8b05436f-e4ea-4f8e-85ff-4ce195645c0e,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [91faf3db-94ce-4508-87d2-206b19ba0302,beff242e-580b-47c0-9844-c1a68c36c5bf,male,Guy979,Towne435]:1, [69ea0b24-7d91-4498-991f-49f4b07914c0,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [ad2dceaf-b8e6-49a0-952c-bcda78fc7b0b,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [d2353195-134f-44f1-835c-d0801a8f31b2,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [13c95f69-822b-44c6-ada3-d73aa1466290,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [c98f9644-7da9-4fc4-bf4d-5da3df697616,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [6b9ffc9c-80b0-40c2-8cf7-f4d51b5448ab,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [f4ae2f38-086a-450a-bd38-8460ee704763,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [6017f9b9-36a1-4cc2-a0ae-af31dc92b089,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [69ea0b24-7d91-4498-991f-49f4b07914c0,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [37af6887-b8ba-480d-bb1c-4409711b8e2f,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [304a8806-48e6-4d35-bb17-121f1190b475,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [fd73b5ca-079f-47a5-90b1-e49a547d1554,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [ba99aa15-c5a4-48e9-9858-df6a8c4a53d2,7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,Heller342]:1, [0f1004c8-e9e9-477d-8c43-1eddc445664d,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [df0e5bbc-9657-4e73-bfbc-0a92ae5da74d,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [c3034cd6-9395-4b50-b14b-e457b4077e23,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [31b93f2e-caa4-4a7f-82ca-5b59f1fc2fdd,2b36c1e2-bbe1-45ae-8124-4adad2677702,male,Pedro316,Ulibarri312]:1, [22d20864-b7f9-44f6-88e3-6c3db215eb9a,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [2d4189ac-8eb3-4f4a-9bb1-0f754d715aee,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [113e8a00-6fd2-489c-867b-6eedf314c774,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [80b37d35-ee1e-49ff-82d3-6e10b0798fd6,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [c98f9644-7da9-4fc4-bf4d-5da3df697616,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [b566351c-0d0f-49a8-b7f0-063975f0ea43,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [ddefa5f2-0d73-4a62-a938-920ee87f7d66,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [bc243663-b435-43a0-912f-40a6f3bfcc2b,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [2d19750d-c270-4be9-a84a-ddcdbb64085a,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [9404f7b4-1c0c-4e87-b71f-ff267d0552e6,e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female,Su690,Ebert178]:1, [c6fbf259-f45f-4266-b988-4b568b8c36c2,bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,male,Gilberto712,MacGyver246]:1, [2e2cebf2-8c0e-4a89-8139-c2b233343dd7,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [9ce65331-faf8-477a-b338-25678919973b,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [dad66b19-6c91-4513-aa29-abd08fa256cf,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [0d8d0441-a4ad-4f15-bc61-5d9694ed3d48,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [113e8a00-6fd2-489c-867b-6eedf314c774,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [76b9935f-b44e-42b6-a991-e2e724b42334,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Arianne,Burchard]:1, [5eaf7eae-ffb9-44ec-8d46-fa2b87bedefc,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [35a7f624-22be-48b3-b82c-45cf2667c527,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [45407705-2b60-4788-981b-8090026f3b0b,beff242e-580b-47c0-9844-c1a68c36c5bf,male,Guy979,Towne435]:1, [5e7b39f8-773d-4ffb-83e1-735923586881,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Moyna,Krajcik437]:1, [fd73b5ca-079f-47a5-90b1-e49a547d1554,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [13a2e7a0-1cf8-475f-8065-6d03b6538c9a,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [432d6af2-0c59-420e-9434-9b416fb36a85,a7eb2ce7-1075-426c-addd-957b861b0e55,male,Shirley182,Botsford977]:1, [b64a7247-1000-4701-8771-caa6252cc905,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [76b9935f-b44e-42b6-a991-e2e724b42334,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [020acef9-0421-46b1-9289-92cdc59c30ca,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [10321ec0-3613-4741-a9c3-47bafbc3fae4,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [cdd25034-c562-4788-aa9e-e53d8006bcbd,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:1, [53bf45a8-d83f-429c-9b91-26b086a405ea,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [ad7d9189-d6b1-4e98-9900-af4bcb9e50b8,8ee183e2-b3c0-4151-be94-b945d6aa8c6d,male,Seymour882,Krajcik437]:1, [764a0e55-a10a-4d19-aa18-d414cb911a8d,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:1, [791b93c5-dfab-4a85-a810-5b01b3531c09,7001ad9c-34d2-4eb5-8165-5fdc2147f469,female,Cherryl901,Heller342]:1, 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[f9994712-1f5e-4a3b-9d64-369b1e3e8f4b,121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,Gleichner915]:1, [1ec37957-06f7-4de5-aa2c-1dc9d02e1ddd,beff242e-580b-47c0-9844-c1a68c36c5bf,male,Guy979,Towne435]:1, [b566351c-0d0f-49a8-b7f0-063975f0ea43,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Wuckert783]:2, [84a1a6b4-583f-4525-b048-d676da5d7533,9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,Oberbrunner298]:2]>
ExtractQueryTest.codingColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L218
[UNSUPPORTED_DATA_TYPE_FOR_DATASOURCE] The CSV datasource doesn't support the column `@y2o1ki` of the type "STRUCT<id: STRING, system: STRING, version: STRING, code: STRING, display: STRING, userSelected: BOOLEAN, _fid: INT>".
ExtractQueryTest.eliminatesTrailingNulls: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L285
expected: <[[8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null]:1, [121503c8-9564-4b48-9086-a22df717948e,null]:1, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null]:1, [9360820c-8602-4335-8b50-c88d627a0c20,72892002]:2, [beff242e-580b-47c0-9844-c1a68c36c5bf,null]:1, [a7eb2ce7-1075-426c-addd-957b861b0e55,null]:1, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null]:1]> but was: <[[8ee183e2-b3c0-4151-be94-b945d6aa8c6d,null]:8, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,null]:8, [121503c8-9564-4b48-9086-a22df717948e,null]:10, [2b36c1e2-bbe1-45ae-8124-4adad2677702,null]:3, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,null]:5, [9360820c-8602-4335-8b50-c88d627a0c20,null]:14, [9360820c-8602-4335-8b50-c88d627a0c20,72892002]:2, [beff242e-580b-47c0-9844-c1a68c36c5bf,null]:3, [a7eb2ce7-1075-426c-addd-957b861b0e55,null]:8, [bbd33563-70d9-4f6d-a79a-dd1fc55f5ad9,null]:10]>
ExtractQueryTest.multipleResolves: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L136
expected: <[[308eba53-29fa-489a-97dc-741b077841a7,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [21995497-0eb8-4c0b-8c23-e6a829f3d596,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [f6d3ff7b-f6e1-416a-bb05-73dfa8d129b5,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [fcc916dd-5e4f-4bf7-9aef-c906a36d7301,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [bbd0f936-0cb9-4cc9-858c-2926b2b1c1eb,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [4cc605d0-d0c6-4de3-849a-f5f92b35d2a0,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [e1040d58-53bc-4467-8101-ca53b772cede,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [cdb8493c-e3b0-447f-b16b-e58dd64660f3,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [12b212d8-bc6e-415a-93b0-594381726668,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [721e4027-a080-40d8-bc4a-43cd33477611,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [6a5d8a68-bbe0-4408-ada5-a843ee6bd9b0,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [56999896-e36b-4e63-a6b6-dbb85dfe1936,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [0134901a-4a69-4b39-92ea-d6f48ec83c6e,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [f883f2ca-d523-4c9f-86b2-0add137901de,ff9863d3-3fa3-3861-900e-f00148f5d9c2,SHRINERS' HOSPITAL FOR CHILDREN - BOSTON, THE]:1, [96b2282d-1384-4cfb-9958-f009fb501626,4f3a530e-a2f7-3de0-9a09-c0a70a9ab894,BERKSHIRE MEDICAL CENTER INC - 1,01201]:1, [8e9e848c-0547-4f2c-8b5f-e33d79bbed67,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [b1d4dc41-07ae-44db-ae17-1df86c5a62cf,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [cf67a8d4-48e2-4dc9-a521-6aabcff0330b,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [f3eb0c38-2571-44e7-be39-732eb52cf1df,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [f29330d0-5b32-4f75-b558-a1c7f05c0b4a,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [add6d754-a075-4693-a33a-c061c9a368ff,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [39efc9b8-a75f-43a3-98a2-5bdc1c8207d2,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [e8c41168-a093-40eb-8baa-6802d24f554a,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [50eac25a-3761-4de3-8a69-aae52e658300,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [48cc2275-a478-4ade-b076-cf38e1d16017,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [a6cb423a-7571-46df-83e2-ccc6820adb36,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [2bd766e5-60e4-4469-bb97-54f0503a1eb0,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [6af73cae-2e4e-485f-a74d-6f4307eb3af3,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [900ce9fe-02d3-476b-902a-9467767ecdcf,c1c433e1-9ed4-3730-bd86-d25de4fa96bf,MASSACHUSETTS GENERAL PHYSICIANS ORGANIZATION, INC]:1, [d90676d2-ce74-4867-a00f-6dbffa7c00be,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [2de1f829-c9d2-4f22-bf39-536dcb82fc3e,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [2d2e07ec-e697-4384-a679-867e93740921,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [3397a796-894d-409c-97de-a9e6f3f88198,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [7f410064-638a-4477-85c4-97fc2bb14a49,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [224e538d-3622-4f5e-b772-211ed358d8de,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [45b25ced-6eed-4fca-8ec1-b7d32ea13efe,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [b7772635-1801-48e4-a442-f4aaa6860544,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [ca7f269d-3794-4994-8c46-d8e9f2aa6378,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [102e16c5-4920-4dad-b142-0b280b2aacad,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [72c611bb-471e-40f2-a6a8-0ae7b7b6b63e,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [374fd699-6b74-4500-9d60-2473c7e0364f,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [984067fc-3dfc-47b7-8ee0-4d9b27d43860,0f7f97f6-693c-3de9-8190-85feaf4632e2,CONCENTRA URGENT CARE - EAST BOSTON,2128]:1, [d7a48a26-7731-4046-bf22-78f0b8084eb9,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [f1293c5e-c997-4ba9-8bfd-438e7a840dc8,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [c3ec1f2e-1411-41e4-8370-acd5a8f68cf4,8b58cdd1-3d79-3126-8fe0-da2c54d6805c,CARNEY HOSPITAL,02124]:1, [a6b084fb-ada7-480a-9adc-f180d4eb1e2a,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [836b2e59-fb97-4014-ab0c-d5a5dc750969,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [62059efc-7607-41c9-a3ba-70948f6a8a1d,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [baf48725-f0f9-4357-a71d-b1104910deae,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [b07fb98d-2da4-423a-83b4-7a673de93096,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [85e41a01-04e5-44d2-8b3a-4d3ad7b0f87b,ff9863d3-3fa3-3861-900e-f00148f5d9c2,SHRINERS' HOSPITAL FOR CHILDREN - BOSTON, THE]:1, [395019b6-84e8-4919-8b8b-ac64e4a6eade,08bcda9c-f8c8-3244-82d4-fc306a7a55d3,BOSTON MEDICAL CENTER CORPORATION-,02118]:1, [7e7322a6-7912-4101-b3be-d134245a0626,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [85c997bf-63d9-4ebb-8e0b-320de3dddc6c,e78cfad6-cc68-393f-bc00-ba462d78ad71,NORTH SUFFOLK MENTAL HEALTH ASSOCIATION, INC.]:1, [ae9e663e-8c15-43c9-8a88-52b61cbf07a9,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [23780032-f3bb-4b40-af2e-3fa6b1677376,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [bf895c48-1d52-4780-8e9a-532d69356d28,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [359cb842-c25b-429f-ba9b-d52f171e5631,ff9863d3-3fa3-3861-900e-f00148f5d9c2,SHRINERS' HOSPITAL FOR CHILDREN - BOSTON, THE]:1, [4e6b69c7-61f9-4ff5-8c33-ad400edb9b06,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [f2c9ca81-8b1e-4873-bd8a-1a6e1411193c,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [fc4d37ec-22b7-4ea0-a34e-dcd4beb2001c,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [d05461d6-13bf-402c-890d-db6404933f7c,44bef9d3-91c2-3005-93e0-ccf436348ff0,MASSACHUSETTS EYE AND EAR INFIRMARY -,02114]:1, [ca3e0486-fd6b-4a13-a741-3a47760b412d,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [5f64131b-d410-449a-9de6-35415919fec5,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [b00df815-7528-4967-bfe2-311130d91c21,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [16d280a2-c61f-487f-9034-22e884158969,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [4506aa76-9d0d-40e4-85bc-5735f74522a0,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [c892b1d7-7485-407d-8883-54fb7fecebc1,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [e1c2ad9f-6f61-4f16-805a-2f405b63659a,2269bc9e-cade-3aaa-a2e5-fbd322cd2ad0,PCP43736,02128-1134]:1, [4a464bb5-9373-4f1b-9c03-053c64797114,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, [dfe38e2d-23d5-45c6-86bd-f83fe3b6a1d8,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [def5fd23-2b74-4c64-85e9-fac27e626bb7,4f3a530e-a2f7-3de0-9a09-c0a70a9ab894,BERKSHIRE MEDICAL CENTER INC - 1,01201]:1, [21c6e0fc-bf47-4f80-b1ff-85b940445bdf,cb6a50e0-af76-3758-99ad-3200ede03fff,BETH ISRAEL DEACONESS MEDICAL CENTER,02215]:1, [b0d337c5-3555-4817-ba59-4ceea5ad8a91,36c06fcd-daf1-3e5f-869c-f0af0809c8c4,PCP149432,02148-7028]:1, [2ee2ab26-09fb-4e12-bf21-9fed3b4c38de,e78cfad6-cc68-393f-bc00-ba462d78ad71,NORTH SUFFOLK MENTAL HEALTH ASSOCIATION, INC.]:1, [749babeb-6883-4bd4-92a5-bec52769071c,235b2155-9bbb-3632-9bf7-858ca62a6f25,PCP11768,02043-1743]:1, [f3c2f842-6aa3-42c9-a0f3-895c40456868,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [f18b08bd-40da-43c1-87ec-4ba23542635f,c1c433e1-9ed4-3730-bd86-d25de4fa96bf,MASSACHUSETTS GENERAL PHYSICIANS ORGANIZATION, INC]:1, [b5d06aa6-b5c6-4782-a0f8-dbf4121e1baa,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [922e2443-9cc5-421f-8310-9cd23f6e9f2d,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [6d47a2fe-3645-4c5c-bebe-1b822eff197f,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [41d26b1c-57b9-408c-b955-bf0ee1db4809,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [1f3443ee-d15e-4894-b18e-185cfadfcdea,c1c433e1-9ed4-3730-bd86-d25de4fa96bf,MASSACHUSETTS GENERAL PHYSICIANS ORGANIZATION, INC]:1, [3ddf46fe-b5be-456d-810f-ea6a7402236d,75bce424-82dd-3c8e-9a24-8bb2b2939174,PCP81055,02151-3257]:1, [a221198d-000e-497b-8b70-bb4d37f7bbe1,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [0364073f-91d8-47a1-b8b0-107c6318a691,d692e283-0833-3201-8e55-4f868a9c0736,HALLMARK HEALTH SYSTEM,02176]:1, 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AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [6e187f47-91a1-4217-a185-31b6f01db225,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [11dafd5c-85e7-4275-a147-89a63641e35e,f5c2ed46-d994-33c7-bc9e-c723b8ad24a0,PCP65005,02151-3200]:1, [777aa5f2-2a09-4aed-92ea-912694e28b48,b7dc82e4-3595-391b-a897-495dd7e5cf38,PCP103,01906-1980]:1, [36160225-76a2-4cf1-8bf8-5a3d3f2ec9d7,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL HOSPITAL,02114]:1, [acb2329d-b1c3-45c3-ad28-91a09aa521e1,d7b11827-25f2-350b-bcd8-939fc59851b0,BOSTON CHILDREN'S HOSPITAL,02115]:1, [e4358f28-62a8-4e06-b2bd-cb00d3310349,4afe828b-d23e-3b89-afa4-f2fa00720415,PCP131717,01237-9524]:1, [01ac1476-0c9c-4cd7-82a6-4ff526018e9a,d733d4a9-080d-3593-b910-2366e652b7ea,BRIGHAM AND WOMEN'S FAULKNER HOSPITAL,02130]:1, [5e1fe0f2-4517-462b-8287-7824f9a60f4f,62fa9127-485f-3032-87cc-6576d91fec94,LAHEY CLINIC NORTHSHORE,1960]:1, [42aa48c7-68cc-4bee-9730-cff29f0e36c5,d78e84ec-30aa-3bba-a33a-f29a3a454662,MASSACHUSETTS GENERAL 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ExtractQueryTest.multipleFilters: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L253
expected: <[[121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,10]:1, [9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,16]:1]> but was: <[[9360820c-8602-4335-8b50-c88d627a0c20,female,Karina848,1]:32, [121503c8-9564-4b48-9086-a22df717948e,female,Ophelia894,1]:10]>
FHIR server (tranche 1)
There were 55 failed tests
R API
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
Site
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
R API
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 3)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Import lambda
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JavaScript client
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Site
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Python API
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Encoders
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Encoders
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FHIR server (tranche 2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 2)
No files were found with the provided path: fhir-server/target/timing.log. No artifacts will be uploaded.
FHIR server (tranche 2)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
FHIR server (tranche 1)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 1)
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FHIR server (tranche 1)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
encoders-coverage
32 KB
encoders-surefire-reports
57.8 KB
fhir-server-1-coverage
98 KB
fhir-server-1-surefire-reports
173 KB
fhir-server-2-coverage
98.9 KB
fhir-server-2-surefire-reports
221 KB
import-lambda
19.6 MB