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Fixing issues with references in choices and extensions. #3824

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Fixing issues with references in choices and extensions.

Fixing issues with references in choices and extensions. #3824

Triggered via push January 2, 2025 06:04
@piotrszulpiotrszul
pushed 12baa9a
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Status Failure
Total duration 8m 21s
Artifacts 7

test.yml

on: push
Encoders
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FHIR server (tranche 1)
8m 5s
FHIR server (tranche 1)
FHIR server (tranche 2)
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FHIR server (tranche 2)
FHIR server (tranche 3)
3s
FHIR server (tranche 3)
Docker image
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Docker image
Python API
5m 37s
Python API
JavaScript client
43s
JavaScript client
Import lambda
44s
Import lambda
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64 errors and 16 warnings
FHIR server (tranche 3)
Credentials could not be loaded, please check your action inputs: Could not load credentials from any providers
R API
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v2`. Learn more: https://github.blog/changelog/2024-02-13-deprecation-notice-v1-and-v2-of-the-artifact-actions/
Docker image
Process completed with exit code 1.
Site
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Python API
Process completed with exit code 1.
AggregateQueryExecutorTest.simpleQueryWithNoLabels: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryExecutorTest.java#L120
expected: <[[]:2]> but was: <[]>
AggregateQueryExecutorTest.simpleQueryWithLabels: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryExecutorTest.java#L99
array lengths differ, expected: <2> but was: <0>
AggregateQueryTest.queryMultipleGroupingCounts: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L229
Expected: parameter but none found
AggregateQueryTest.queryWithLargeScaleDecimalResult: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L574
Expected: parameter but none found
AggregateQueryTest.queryWithWhereInAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L383
Expected: parameter but none found
AggregateQueryTest.queryWithNonSingularWhereFollowedByCount: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L509
Expected: parameter but none found
AggregateQueryTest.queryWithNestedAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L398
Expected: parameter but none found
AggregateQueryTest.queryWithCombineResultInSecondFilter: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L604
Expected: parameter but none found
AggregateQueryTest.simpleQuery: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L58
Expected: parameter but none found
AggregateQueryTest.queryWithReverseResolveAndCounts: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L212
Expected: parameter but none found
AggregateQueryTest.queryWithIntegerGroupings: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L108
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAsComparisonOperand: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L318
Expected: parameter but none found
AggregateQueryTest.queryWithAmbiguousSelfJoin: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L335
Expected: parameter but none found
AggregateQueryTest.queryMultipleCountAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L245
Expected: parameter but none found
AggregateQueryTest.queryWithUriValueInGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L427
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndMembership: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L351
Expected: parameter but none found
AggregateQueryTest.queryWithLiteralAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L463
Expected: parameter but none found
AggregateQueryTest.queryWithMultipleGroupingsAndMembership: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L494
Expected: parameter but none found
AggregateQueryTest.queryWithComparisonInAggregation: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L445
Expected: parameter but none found
AggregateQueryTest.queryWithReverseResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L197
Expected: parameter but none found
AggregateQueryTest.queryWithNonSingularBooleanGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L532
Expected: parameter but none found
AggregateQueryTest.queryWithMemberOf: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L286
Expected: parameter but none found
AggregateQueryTest.queryWithDateComparison: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L153
Expected: parameter but none found
AggregateQueryTest.queryWithPolymorphicResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L182
Expected: parameter but none found
AggregateQueryTest.queryWithChoiceElement: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L138
Expected: parameter but none found
AggregateQueryTest.queryWithMultipleTrivialAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L619
Expected: parameter but none found
AggregateQueryTest.queryWithNestedAggregationAndNoGroupings: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L412
Expected: parameter but none found
AggregateQueryTest.queryWithWhere: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L261
Expected: parameter but none found
AggregateQueryTest.queryWithCanonicalGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L561
Expected: parameter but none found
AggregateQueryTest.queryWithDateTimeGrouping: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L300
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndBoolean: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L367
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAndGroupedData: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L478
Expected: parameter but none found
AggregateQueryTest.queryWithResolve: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L168
Expected: parameter but none found
AggregateQueryTest.multipleAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L92
Expected: parameter but none found
AggregateQueryTest.multipleGroupingsAndAggregations: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L76
Expected: parameter but none found
AggregateQueryTest.queryWithBracketing: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L547
Expected: parameter but none found
AggregateQueryTest.queryWithMathExpression: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L123
Expected: parameter but none found
AggregateQueryTest.queryWithWhereAggregationAndCount: fhir-server/src/test/java/au/csiro/pathling/aggregate/AggregateQueryTest.java#L588
Expected: parameter but none found
ExtractQueryTest.whereInMultipleColumns: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L315
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.multipleIndependentUnnestings: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L367
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.simpleQueryWithAliases: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L113
Error invoking method-defined function
ExtractQueryTest.linkedUnnesting: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L349
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.resolveAndCodingLiteralColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L201
Error invoking method-defined function
ExtractQueryTest.literalColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L185
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.combineWithUnequalCardinalities: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L502
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.multipleNonSingularColumnsWithDifferentTypes: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L331
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.combineResultInSecondFilter: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L299
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.limit: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L270
expected: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]> but was: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]>
ExtractQueryTest.multipleReverseResolves: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L151
Error invoking method-defined function
ExtractQueryTest.multiplePolymorphicResolves: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L169
Error invoking method-defined function
FHIR server (tranche 1)
There were 61 failed tests
AsyncTest.asyncExtract: fhir-server/src/test/java/au/csiro/pathling/test/integration/AsyncTest.java#L84
expected: <202 ACCEPTED> but was: <500 INTERNAL_SERVER_ERROR>
CachedSearchTest.searchWithNoFilter: fhir-server/src/test/java/au/csiro/pathling/test/integration/CachedSearchTest.java#L57
expected: <true> but was: <false>
CapabilityStatementTest.capabilityStatement: fhir-server/src/test/java/au/csiro/pathling/test/integration/CapabilityStatementTest.java#L61
rest[mode=server].resource[]: Expected 141 values but got 142
ExtractTest.extract: fhir-server/src/test/java/au/csiro/pathling/test/integration/ExtractTest.java#L77
expected: <true> but was: <false>
MultipleAggregationsAndResolveTest.multipleAggregationsAndResolve: fhir-server/src/test/java/au/csiro/pathling/test/integration/MultipleAggregationsAndResolveTest.java#L68
Expected: parameter but none found
MultipleAggregationsAndResolveTest.multipleAggregationsAndResolveWithGroupings: fhir-server/src/test/java/au/csiro/pathling/test/integration/MultipleAggregationsAndResolveTest.java#L80
Expected: parameter but none found
SearchTest.searchWithNoFilter: fhir-server/src/test/java/au/csiro/pathling/test/integration/SearchTest.java#L62
expected: <true> but was: <false>
FHIR server (tranche 2)
There were 7 failed tests
Site
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
R API
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
FHIR server (tranche 3)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
R API
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
JavaScript client
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Import lambda
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Site
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Python API
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Encoders
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Encoders
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
FHIR server (tranche 1)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 1)
No files were found with the provided path: fhir-server/target/timing.log. No artifacts will be uploaded.
FHIR server (tranche 1)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
FHIR server (tranche 2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FHIR server (tranche 2)
No files were found with the provided path: fhir-server/target/timing.log. No artifacts will be uploaded.
FHIR server (tranche 2)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
encoders-coverage
32 KB
encoders-surefire-reports
57.7 KB
fhir-server-1-coverage
96.4 KB
fhir-server-1-surefire-reports
112 KB
fhir-server-2-coverage
97.9 KB
fhir-server-2-surefire-reports
251 KB
import-lambda
19.6 MB