Merge pull request #10 from Wedge-lab/mjakobs-patch-1

Update README.md
Wedge-lab · Aug 7, 2023 · 5bdf4aa · 5bdf4aa
2 parents e8b32dd + 5f4b103
commit 5bdf4aa
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -13,13 +13,15 @@ If you use `AmplificationTimeR` in your work, please cite our manuscript (curren
 ## Installation
 `AmplificationTimeR` requires the following packages to be installed before use:
 ```
+if (!require("BiocManager", quietly = TRUE))
+    install.packages("BiocManager")
 if (!require("SomaticSignatures", quietly = TRUE))
-    install.packages("SomaticSignatures")
+    BiocManager::install("SomaticSignatures")
 if (!require("BSgenome.Hsapiens.UCSC.hg19", quietly = TRUE))
-    install.packages("BSgenome.Hsapiens.UCSC.hg19")
+    BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")
     # OR
 if (!require("BSgenome.Hsapiens.UCSC.hg38", quietly = TRUE))
-    install.packages("BSgenome.Hsapiens.UCSC.hg38")    
+    BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")    
 ```
 
 To install `AmplificationTimeR` run: