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Add demo for CellProfiler SQLite export thumbnail data using ExampleHuman #4
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LGTM! LOVE seeing this process get started!
I left a good amount of comments to address. I think we will need to decide what we expect as the overlay output(s) for coSMicQC, which we can discuss in person if that works!
src/docker/sqlite_image_thumbnails/ExampleHuman_exporttodatabase_thumbnails.cppipe
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src/docker/sqlite_image_thumbnails/ExampleHuman_exporttodatabase_thumbnails.cppipe
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src/docker/sqlite_image_thumbnails/ExampleHuman_exporttodatabase_thumbnails.cppipe
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Thanks @jenna-tomkinson for the review here! I made notes throughout and tried to capture possible points of action for future work in #5 . Going to merge this in for now. |
This PR adds a demonstration of using CellProfiler to export a SQLite file which includes mask and image thumbnails from the ExampleHuman dataset. I've uploaded the SQLite file and the translated PNG's of the thumbnails which are found in the dataset under the relevant
output
dir.Findings:
Per_Image
table within the SQLite output meaning they are "per image" and not "per object"Thanks for any feedback, please don't hesitate to let me know if you have any questions.
Closes #2
Closes #3