Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

edited SQL to output fasta files into fasta dir #36

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

edited SQL to output fasta files into fasta dir #36

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions Model/lib/wdk/model/questions/params/similarityParams.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@ order by parentterm,term
case when ot.organism is null
then files.parentterm else ot.parentterm end as parentterm,
case when (ot.organism is null or ( ot.organism is not null and ot.term = files.term))
then '@WEBSERVICEMIRROR@' || '/' || ot.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/motif/GenomeDoubleStrand.fasta'
then '@WEBSERVICEMIRROR@' || '/' || ot.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/fasta/GenomeDoubleStrand.fasta'
else '-1'
end as internal
from apidbtuning.organismtree ot,
Expand Down Expand Up @@ -201,7 +201,7 @@ with orgs as (
select distinct nvl(ot.term, files.term) as term,
case when ot.organism is null then files.parentterm else ot.parentterm end as parentterm,
case when (ot.organism is null or ( ot.organism is not null and ot.term = files.term))
then '@WEBSERVICEMIRROR@' || '/' || files.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/motif/AnnotatedProteins.fasta'
then '@WEBSERVICEMIRROR@' || '/' || files.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/fasta/AnnotatedProteins.fasta'
else '-1'
end as internal
from apidbtuning.organismtree ot,
Expand Down