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Leverage new htmlHelp attribute for lengthy tooltips #35

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Feb 15, 2024
Merged

Leverage new htmlHelp attribute for lengthy tooltips #35

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64 changes: 49 additions & 15 deletions Model/lib/dst/longReadRnaSeq.dst
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Original file line number Diff line number Diff line change
Expand Up @@ -38,22 +38,56 @@ prop=includeProjects
<columnAttribute name="num_new_models" displayName="Number of transcript models"
help="Number of transcript models identified for the gene" align="center"/>

<columnAttribute name="transcript_novelty" displayName="Transcript Novelty"
help="Describes how the TALON prediction differs from the gene model;
Intergenic: Intergenic predictions lack any overlap with known genes;
NIC: Novel In Collection: Prediction uses known splice donors and acceptors but reveals new connections (e.g., skipped exon isoforms);
NNC: Novel Not in Collection: Prediction has at least one novel donor or acceptor (i.e., at least one novel exon boundary);
ISM: Incomplete Splice Match: Prediction matches subsection of a known transcript model but has a novel putative start or end point;
Genomic: Prediction has no overlapping splice junctions compared to known transcripts;
Known: Prediction exactly matches a known model;
Antisense: Prediction overlaps an existing model but is oriented in the opposite direction" align="center"/>
<columnAttribute name="transcript_novelty" displayName="Transcript Novelty" align="center">
<htmlHelp><![CDATA[
<div>
Describes how the TALON prediction differs from the gene model
<dl>
<dt>Intergenic:</dt>
<dd>Intergenic predictions lack any overlap with known genes</dd>

<columnAttribute name="incomplete_splice_match_type" displayName="Talon splice mismatch type"
help="Subcategory for ISM predictions;
Suffix: Mismatch at 5' end;
Prefix: Mismatch at 3' end;
Both: Mismatches at both ends;
None: Category for other transcript novelty types" align="center"/>
<dt>Novel In Collection (NIC):</dt>
<dd>Prediction uses known splice donors and acceptors but reveals new connections (e.g., skipped exon isoforms)</dd>

<dt>Novel Not in Collection (NNC):</dt>
<dd>Prediction has at least one novel donor or acceptor (i.e., at least one novel exon boundary)</dd>

<dt>Incomplete Splice Match (ISM):</dt>
<dd>Prediction matches subsection of a known transcript model but has a novel putative start or end point</dd>

<dt>Genomic:</dt>
<dd>Prediction has no overlapping splice junctions compared to known transcripts</dd>

<dt>Known:</dt>
<dd>Prediction exactly matches a known model</dd>

<dt>Antisense:</dt>
<dd>Prediction overlaps an existing model but is oriented in the opposite direction</dd>
</dl>
</div>
]]></htmlHelp>
</columnAttribute>

<columnAttribute name="incomplete_splice_match_type" displayName="Talon splice mismatch type" align="center">
<htmlHelp><![CDATA[
<div>
Subcategory for ISM predictions
<dl>
<dt>Suffix:</dt>
<dd>Mismatch at 5' end</dd>

<dt>Prefix:</dt>
<dd>Mismatch at 3' end</dd>

<dt>Both:</dt>
<dd>Mismatches at both ends</dd>

<dt>None:</dt>
<dd>Category for other transcript novelty types</dd>
</dl>
</div>
]]></htmlHelp>
</columnAttribute>

<columnAttribute name="contextStart" internal="true"/>
<columnAttribute name="contextEnd" internal="true"/>
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