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Fix KGX export #7

Merged
merged 10 commits into from
Jun 21, 2024
Merged

Fix KGX export #7

merged 10 commits into from
Jun 21, 2024

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bill-baumgartner
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Changes made while testing KGX export

attempting partial/expand for kubernetes pod operator to ensure extraction of all edges

Hardcoded total edge count to 50000, and assertion limit to 25000 and chunk size to 5000 - so it should create 2 pods I think.
moved the schedule_interval out of default_args and into the DAG constructor b/c the KubernetesPodOperator.partial() did not like that argument.
the generate_bte_operations task requires a single edges.tsv file, so I'm attempting to add a task to cat all of the generated edge*.tsv files into a single edges.tsv file.
revised log statement
nodes.tsv.gz file is now directly output to kgx-export/
fixed text_mining_agent value
updates yielded successful kgx export
assertion count is still hard coded -- that is the next thing to fix.
@bill-baumgartner bill-baumgartner merged commit 7f1bac1 into main Jun 21, 2024
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@bill-baumgartner bill-baumgartner deleted the fix-kgx-export branch June 21, 2024 05:23
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