removed workflow coress to num threads

TurakhiaLab · Jan 23, 2024 · d5fce31 · d5fce31
1 parent 707f7a8
commit d5fce31
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/rules/sampling.smk b/workflow/rules/sampling.smk
@@ -39,7 +39,7 @@ rule sequence_select:
 		config["OUT_DIR"]+"/benchmarks/{sample}.sample.txt"
 	output:
         	config["OUT_DIR"]+"/samples/{sample}_temp.fa"
-	threads:workflow.cores
+	threads:32
 	shell:
 			'''
 			echo "We are starting to sample {input}"
@@ -57,4 +57,4 @@ rule sequence_merge:
         	config["OUT_DIR"]+"/samples/out.fa",
 			report(config["OUT_DIR"]+"/plots/sampling.png",caption="../report/sampling.rst",category='Sampling Report')
 	shell:
-		"python3 workflow/scripts/sequence_merge.py {params.gene_dir} {output} {params.plotdir}"
+		"python3 workflow/scripts/sequence_merge.py {params.gene_dir} {output} {params.plotdir}"