sampling rule threads fixed

TurakhiaLab · Feb 25, 2024 · 259f628 · 259f628
1 parent 57be315
commit 259f628
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diff --git a/workflow/rules/mashtree.smk b/workflow/rules/mashtree.smk
@@ -39,6 +39,7 @@ rule sequence_select:
 		THRES=config["UPPER_CASE"]
 	benchmark:
 		config["OUT_DIR"]+"/benchmarks/{sample}.sample.txt"
+	threads: lambda wildcards: int(config['num_threads'])
 	output:
         	config["OUT_DIR"]+"/samples/{sample}_temp.fa"
 	shell:

diff --git a/workflow/rules/sampling.smk b/workflow/rules/sampling.smk
@@ -37,6 +37,7 @@ rule sequence_select:
 		THRES=config["UPPER_CASE"]
 	benchmark:
 		config["OUT_DIR"]+"/benchmarks/{sample}.sample.txt"
+	threads: lambda wildcards: int(config['num_threads'])
 	output:
         	config["OUT_DIR"]+"/samples/{sample}_temp.fa"
 	shell: