GitHub - ToumaYoneyama/SunithaNagrathLab: Sunitha Nagrath Lab at University of Michigan

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Metrics		Metrics
fixed_old_datasets		fixed_old_datasets
100824logistic_regression_model.pkl		100824logistic_regression_model.pkl
100824scaler.pkl		100824scaler.pkl
111524X_new.csv		111524X_new.csv
111524X_old.csv		111524X_old.csv
111524dt_model.pkl		111524dt_model.pkl
111524final_combined_data1.csv		111524final_combined_data1.csv
111524lr_model.pkl		111524lr_model.pkl
111524new_data_feature_stats.csv		111524new_data_feature_stats.csv
111524new_data_normalized_method_one_feature_stats.csv		111524new_data_normalized_method_one_feature_stats.csv
111524new_data_normalized_method_two_feature_stats.csv		111524new_data_normalized_method_two_feature_stats.csv
111524nn_model.h5		111524nn_model.h5
111524old_data_feature_stats.csv		111524old_data_feature_stats.csv
111524old_data_normalized_method_two_feature_stats.csv		111524old_data_normalized_method_two_feature_stats.csv
111524pc1_features.csv		111524pc1_features.csv
111524scaler_new_data.pkl		111524scaler_new_data.pkl
111524scaler_old_data.pkl		111524scaler_old_data.pkl
111824dt_model.pkl		111824dt_model.pkl
111824dt_model_on_new_data.pkl		111824dt_model_on_new_data.pkl
111824dt_on_new_normalized_method_1_results.csv		111824dt_on_new_normalized_method_1_results.csv
111824dt_on_new_normalized_method_2_results.csv		111824dt_on_new_normalized_method_2_results.csv
111824lr_model.pkl		111824lr_model.pkl
111824lr_model_on_new_data.pkl		111824lr_model_on_new_data.pkl
111824lr_on_new_normalized_method_1_results.csv		111824lr_on_new_normalized_method_1_results.csv
111824lr_on_new_normalized_method_2_results.csv		111824lr_on_new_normalized_method_2_results.csv
111824new_normalized_pc1_features.csv		111824new_normalized_pc1_features.csv
111824results_dt_model_on_new_normalized_method_1.csv		111824results_dt_model_on_new_normalized_method_1.csv
111824results_dt_model_on_new_normalized_method_2.csv		111824results_dt_model_on_new_normalized_method_2.csv
111824results_dt_model_on_old_data		111824results_dt_model_on_old_data
111824results_dt_model_trained_on_new_data_predicted_on_old_data		111824results_dt_model_trained_on_new_data_predicted_on_old_data
111824results_dt_model_trained_on_old_data_normalized_predicted_on_old_data_normalized		111824results_dt_model_trained_on_old_data_normalized_predicted_on_old_data_normalized
111824results_dt_model_trained_on_old_data_predicted_on_old_data		111824results_dt_model_trained_on_old_data_predicted_on_old_data
111824results_lr_model_on_new_normalized_method_1.csv		111824results_lr_model_on_new_normalized_method_1.csv
111824results_lr_model_on_new_normalized_method_2.csv		111824results_lr_model_on_new_normalized_method_2.csv
111824results_lr_model_trained_on_old_data_normalized_predicted_on_old_data_normalized		111824results_lr_model_trained_on_old_data_normalized_predicted_on_old_data_normalized
111824results_lr_model_trained_on_old_data_predicted_on_old_data		111824results_lr_model_trained_on_old_data_predicted_on_old_data
111924dt_model.pkl		111924dt_model.pkl
111924dt_model_on_new_data.pkl		111924dt_model_on_new_data.pkl
111924lr_model.pkl		111924lr_model.pkl
111924lr_model_on_new_data.pkl		111924lr_model_on_new_data.pkl
111924results_dt_model_on_new_normalized_method_1.csv		111924results_dt_model_on_new_normalized_method_1.csv
111924results_dt_model_on_new_normalized_method_2.csv		111924results_dt_model_on_new_normalized_method_2.csv
111924results_dt_model_trained_on_old_data_normalized_predicted_on_old_data_normalized		111924results_dt_model_trained_on_old_data_normalized_predicted_on_old_data_normalized
111924results_dt_model_trained_on_old_data_normalized_predicted_on_old_data_normalized.csv		111924results_dt_model_trained_on_old_data_normalized_predicted_on_old_data_normalized.csv
111924results_dt_model_trained_on_old_data_predicted_on_old_data		111924results_dt_model_trained_on_old_data_predicted_on_old_data
111924results_dt_model_trained_on_old_data_predicted_on_old_data.csv		111924results_dt_model_trained_on_old_data_predicted_on_old_data.csv
111924results_lr_model_on_new_normalized_method_1.csv		111924results_lr_model_on_new_normalized_method_1.csv
111924results_lr_model_on_new_normalized_method_2.csv		111924results_lr_model_on_new_normalized_method_2.csv
111924results_lr_model_trained_on_old_data_normalized_predicted_on_old_data_normalized		111924results_lr_model_trained_on_old_data_normalized_predicted_on_old_data_normalized
111924results_lr_model_trained_on_old_data_normalized_predicted_on_old_data_normalized.csv		111924results_lr_model_trained_on_old_data_normalized_predicted_on_old_data_normalized.csv
111924results_lr_model_trained_on_old_data_predicted_on_old_data		111924results_lr_model_trained_on_old_data_predicted_on_old_data
111924results_lr_model_trained_on_old_data_predicted_on_old_data.csv		111924results_lr_model_trained_on_old_data_predicted_on_old_data.csv
Combined_Data.csv		Combined_Data.csv
E.csv:Zone.Identifier		E.csv:Zone.Identifier
E_memb.csv:Zone.Identifier		E_memb.csv:Zone.Identifier
MyExpt_Experiment.csv		MyExpt_Experiment.csv
MyExpt_FilteredCells.csv		MyExpt_FilteredCells.csv
MyExpt_FilteredCells_with_Cell_Quality_annotation.csv		MyExpt_FilteredCells_with_Cell_Quality_annotation.csv
MyExpt_FilteredCells_with_annotation_additional_corresponding_cell.csv:Zone.Identifier		MyExpt_FilteredCells_with_annotation_additional_corresponding_cell.csv:Zone.Identifier
MyExpt_FilteredNuclei_nei_annotated_additional_corresponding_cell.csv:Zone.Identifier		MyExpt_FilteredNuclei_nei_annotated_additional_corresponding_cell.csv:Zone.Identifier
MyExpt_Final_Nuclei.csv		MyExpt_Final_Nuclei.csv
MyExpt_Image_Number_w_file.csv		MyExpt_Image_Number_w_file.csv
X_new.csv		X_new.csv
X_old.csv		X_old.csv
decision_tree_model.joblib		decision_tree_model.joblib
em_score_for_logistic_regression_on_yuru_data.csv		em_score_for_logistic_regression_on_yuru_data.csv
em_score_for_yuru_logistic_regression_on_final_combined_data.csv		em_score_for_yuru_logistic_regression_on_final_combined_data.csv
filtered_out_ebp.csv		filtered_out_ebp.csv
final_combined_data1.csv		final_combined_data1.csv
logical_test_data_with_scores.csv		logical_test_data_with_scores.csv
nagrathLab_1.ipynb		nagrathLab_1.ipynb
nagrathLab_2.ipynb		nagrathLab_2.ipynb
nagrathLab_3.ipynb		nagrathLab_3.ipynb
nkEMT.ipynb		nkEMT.ipynb
yuru_final_combined_data.csv		yuru_final_combined_data.csv