Skip to content

Commit

Permalink
Merge pull request #57 from TileDB-Inc/aaronwolen/sc-17974/release-0-1-1
Browse files Browse the repository at this point in the history
Release 0.1.1
  • Loading branch information
aaronwolen authored May 20, 2022
2 parents d97de36 + d2c70e1 commit 79995ed
Show file tree
Hide file tree
Showing 2 changed files with 6 additions and 5 deletions.
6 changes: 2 additions & 4 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ Description: Store and retrieve single cell data using TileDB and the on-disk
format proposed in the Unified Single Cell Data Model and API. Users can
import from and export to in-memory formats used by popular toolchains like
Seurat and Bioconductor SingleCellExperiment.
Version: 0.1.0.9010
Version: 0.1.1
Authors@R: c(
person(given = "Aaron",
family = "Wolen",
Expand Down Expand Up @@ -34,7 +34,7 @@ Imports:
R6,
methods,
Matrix,
tiledb (>= 0.12.0.2),
tiledb (>= 0.13.0),
SeuratObject,
jsonlite,
glue,
Expand All @@ -50,7 +50,5 @@ Suggests:
testthat (>= 3.0.0),
SummarizedExperiment,
SingleCellExperiment
Remotes:
tiledb-inc/tiledb-r
VignetteBuilder: knitr
Config/testthat/edition: 2
5 changes: 4 additions & 1 deletion NEWS.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,9 @@
# tiledbsc (development version)
# tiledbsc 0.1.1

tiledbsc now uses the enhanced Group API's introduced in TileDB v2.8 and TileDB-R 0.12.0.

*Note: The next version of tiledbsc will migrate to the new SOMA-based naming scheme described [here](https://github.com/single-cell-data/matrix-api/issues/27).*

## On-disk changes

Group-level metadata is now natively supported by TileDB so `TileDBGroup`-based classes no longer create nested `__tiledb_group_metadata` arrays for the purpose of storing group-level metadata.
Expand Down Expand Up @@ -35,3 +37,4 @@ See [TileDB 2.8 release notes](https://github.com/TileDB-Inc/TileDB/releases/tag
* The `uri` field for all TileDB(Array|Group)-based classes is now an active binding that retrieves the URI from the private `tiledb_uri` field
* Several default parameters have been changed to store the the `X`, `obs`, and `var` arrays more efficiently on disk (#50)
* Seurat cell identities are now stored in the `active_ident` attribute of the `obs` array (#56)
* Require at least version 0.13.0 of tiledb-r to support retrieval of group names

0 comments on commit 79995ed

Please sign in to comment.