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Add some fresh code maps #151

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Add some fresh code maps #151

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8a7e365
Add mean arterial pressure codes
caufieldjh Jul 19, 2022
a3518e7
Add intracranial pressure codes
caufieldjh Jul 19, 2022
df1625a
Add end tidal CO2 codes
caufieldjh Jul 19, 2022
3f1f413
Add Potassium [Moles/volume] in Arterial blood codes
caufieldjh Jul 20, 2022
39e8bc0
Add codes for BNP
caufieldjh Jul 26, 2022
7a9cf1e
Add codes for fecal occult blood
caufieldjh Jul 26, 2022
c9f2112
Add codes for fibrin D-dimer
caufieldjh Jul 29, 2022
74179d3
Add MRSA screen codes
caufieldjh Aug 3, 2022
aed4158
Add Hep A, B, C Ab codes
caufieldjh Aug 3, 2022
036cdd0
Cleanup extra spaces
caufieldjh Aug 3, 2022
61a12cf
Add EOF newline
caufieldjh Aug 4, 2022
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27 changes: 27 additions & 0 deletions loinc2hpo-annotations.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -663,6 +663,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
2324-2 Qn H HP:0030948 . JGM:azhang[2018-05-08];JGM:azhang[2018-10-17] Not sure what normal should be. Parent term ``Abnormal enzyme/coenzyme activity`` seems too broad.
2333-3 Qn N HP:0500166 . HPO:nvasilevsky[2019-06-14] .
2333-3 Qn H HP:0500167 . HPO:nvasilevsky[2019-06-14] .
2335-8 Ord NEG HP:0002573 . LBL:caufieldjh[2022-07-26] .
2335-8 Ord POS HP:0002573 . LBL:caufieldjh[2022-07-26] .
2336-6 Qn L HP:0032312 . UCD:tjcallahan[2019-01-28];JGM:azhang[2019-02-25] UCDenver survey results
2336-6 Qn N HP:0032179 . UCD:tjcallahan[2019-01-28];JGM:azhang[2019-02-25] UCDenver survey results
2336-6 Qn H HP:0032311 . UCD:tjcallahan[2019-01-28];JGM:azhang[2019-02-25] UCDenver survey results
Expand Down Expand Up @@ -1096,6 +1098,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
5047-6 Qn H HP:0003493 . HPO:nvasilevsky[2019-06-14] .
5117-7 Ord NEG HP:0100778 . HPO:probinson[2018-05-23] .
5117-7 Ord POS HP:0100778 . HPO:probinson[2018-05-23] .
5196-1 Ord NEG HP:0410369 . LBL:caufieldjh[2022-08-03] .
5196-1 Ord POS HP:0410369 . LBL:caufieldjh[2022-08-03] .
5380-1 Qn N HP:0030057 . HPO:nvasilevsky[2018-10-01] .
5380-1 Qn H HP:0032069 . HPO:nvasilevsky[2018-10-01] .
5381-9 Qn N HP:0030057 . HPO:nvasilevsky[2018-10-01] .
Expand Down Expand Up @@ -1857,6 +1861,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
8462-4 Qn L HP:0500104 . JGM:lccarmody[2018-10-16] .
8462-4 Qn N HP:0030972 . JGM:lccarmody[2018-10-16] .
8462-4 Qn H HP:0005117 . JGM:lccarmody[2018-10-16] .
8478-0 Qn N HP:0030972 . LBL:caufieldjh[2022-07-19] .
8478-0 Qn H HP:0004972 . LBL:caufieldjh[2022-07-19] .
8480-6 Qn L HP:0500105 . JGM:lccarmody[2018-10-16] .
8480-6 Qn N HP:0030972 . JGM:lccarmody[2018-10-16] .
8480-6 Qn H HP:0004421 . JGM:lccarmody[2018-10-16] .
Expand Down Expand Up @@ -2426,6 +2432,10 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
13941-0 Qn H HP:0100827 . OHSU:JP[2018-09-26] .
13945-1 Qn N HP:0002907 . JGM:azhang[2018-07-24] .
13945-1 Qn H HP:0002907 . JGM:azhang[2018-07-24] .
13950-1 Ord NEG HP:0410367 . LBL:caufieldjh[2022-08-03] .
13950-1 Ord POS HP:0410367 . LBL:caufieldjh[2022-08-03] .
13955-0 Ord NEG HP:0410371 . LBL:caufieldjh[2022-08-03] .
13955-0 Ord POS HP:0410371 . LBL:caufieldjh[2022-08-03] .
13959-2 Qn L HP:0002901 . JGM:azhang[2018-04-25] copied from: 38230-9
13959-2 Qn N HP:0004363 . JGM:azhang[2018-04-25] copied from: 38230-9
13959-2 Qn H HP:0003072 . JGM:azhang[2018-04-25] copied from: 38230-9
Expand Down Expand Up @@ -3474,6 +3484,9 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
19875-4 Qn N HP:0032357 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-05-03] .
19877-0 Qn L HP:0032356 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-05-03] .
19877-0 Qn N HP:0032356 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-05-03] .
19891-1 Qn L HP:0012417 . LBL:caufieldjh[2022-07-19] .
19891-1 Qn N HP:0500164 . LBL:caufieldjh[2022-07-19] .
19891-1 Qn H HP:0012416 . LBL:caufieldjh[2022-07-19] .
19935-6 Qn L HP:0032355 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-05-03] .
19935-6 Qn N HP:0032355 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-05-03] .
20150-9 Qn L HP:0032342 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-05-03] .
Expand Down Expand Up @@ -4675,6 +4688,9 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
32693-4 Qn H HP:0002151 . OHSU:JP[2018-07-30] .
32710-6 Ord NEG HP:0031812 . HPO:probinson[2018-04-30] .
32710-6 Ord POS HP:0031812 . HPO:probinson[2018-04-30] .
32713-0 Qn L HP:0002900 . LBL:caufieldjh[2022-07-20] .
32713-0 Qn N HP:0011042 . LBL:caufieldjh[2022-07-20] .
32713-0 Qn H HP:0002153 . LBL:caufieldjh[2022-07-20] .
32717-1 Qn L HP:0002902 . JGM:lccarmody[2018-09-21] .
32717-1 Qn N HP:0010931 . JGM:lccarmody[2018-09-21] .
32717-1 Qn H HP:0003228 . JGM:lccarmody[2018-09-21] .
Expand Down Expand Up @@ -4877,6 +4893,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
35384-7 Qn L HP:0008214 . JGM:lccarmody[2018-09-17] .
35384-7 Qn N HP:0025133 . JGM:lccarmody[2018-09-17] .
35384-7 Qn H HP:0025134 . JGM:lccarmody[2018-09-17] .
35492-8 Ord NEG HP:0032326 . LBL:caufieldjh[2022-08-03] .
35492-8 Ord POS HP:0032326 . LBL:caufieldjh[2022-08-03] .
35595-8 Qn N HP:0410172 . HPO:nvasilevsky[2018-12-18] .
35595-8 Qn H HP:0410283 . HPO:nvasilevsky[2018-12-18] .
35618-8 Qn N HP:0410207 . HPO:nvasilevsky[2018-09-14] .
Expand Down Expand Up @@ -5098,6 +5116,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
42593-4 Qn L HP:0002901 . JGM:azhang[2018-04-25] copied from: 38230-9
42593-4 Qn N HP:0004363 . JGM:azhang[2018-04-25] copied from: 38230-9
42593-4 Qn H HP:0003072 . JGM:azhang[2018-04-25] copied from: 38230-9
42637-9 Qn N HP:0031138 . LBL:caufieldjh[2022-07-26] .
42637-9 Qn H HP:0033534 . LBL:caufieldjh[2022-07-26] .
42678-3 Qn L HP:0011935 . HPO:nvasilevsky[2018-07-17] .
42678-3 Qn N HP:0012610 . HPO:nvasilevsky[2018-07-17] .
42678-3 Qn H HP:0012611 . HPO:nvasilevsky[2018-07-17] .
Expand Down Expand Up @@ -6693,6 +6713,9 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
60474-4 Qn L HP:0001896 . HPO:nvasilevsky[2018-05-08] .
60474-4 Qn N HP:0004312 . HPO:nvasilevsky[2018-05-08] .
60474-4 Qn H HP:0001923 . HPO:nvasilevsky[2018-05-08] .
60956-0 Qn L HP:0012641 . LBL:caufieldjh[2022-07-19] .
60956-0 Qn N HP:0012640 . LBL:caufieldjh[2022-07-19] .
60956-0 Qn H HP:0002516 . LBL:caufieldjh[2022-07-19] .
61096-4 Ord NEG HP:0410203 . HPO:nvasilevsky[2018-07-20] .
61096-4 Ord POS HP:0410203 . HPO:nvasilevsky[2018-07-20] .
61128-5 Ord NEG HP:0500100 . HPO:nvasilevsky[2018-10-01] .
Expand Down Expand Up @@ -7414,3 +7437,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curation comment
89540-9 Ord POS HP:0031810 . HPO:nvasilevsky[2019-01-15] copied from: 89541-7 @original comment: copied from: 63243-0
89541-7 Ord NEG HP:0031810 . HPO:nvasilevsky[2019-01-15] copied from: 63243-0
89541-7 Ord POS HP:0031810 . HPO:nvasilevsky[2019-01-15] copied from: 63243-0
90001-9 Ord NEG HP:0032326 . LBL:caufieldjh[2022-08-03] .
90001-9 Ord POS HP:0032326 . LBL:caufieldjh[2022-08-03] .
91556-1 Qn N HP:0040224 . LBL:caufieldjh[2022-07-29] .
91556-1 Qn H HP:0033106 . LBL:caufieldjh[2022-07-29] .