Move sequences.fsa to dumps folder:

SynBioDex · Oct 18, 2021 · 661c606 · 661c606
1 parent 4893acd
commit 661c606
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/flask/cluster.py b/flask/cluster.py
@@ -6,7 +6,7 @@
 
 
 uclust_identity = utils.get_config()['uclust_identity'] # how similar sequences in the same cluster must be
-sequences_filename = 'usearch/sequences.fsa'
+sequences_filename = 'dumps/sequences.fsa'
 
 if 'which_search' not in utils.get_config():
     explorerConfig = utils.get_config()

diff --git a/flask/sequencesearch.py b/flask/sequencesearch.py
@@ -46,7 +46,7 @@ def run_vsearch_global(fileName):
         fileName {string} -- Path to file
     """
     # setting maxaccepts to 0 disables the limit (searches for all possible matches)
-    args = [vsearch_binary_filename, '--usearch_global', fileName, '--db', 'usearch/sequences.fsa','--uc', fileName[:-4] + '.uc', '--uc_allhits',]
+    args = [vsearch_binary_filename, '--usearch_global', fileName, '--db', 'dumps/sequences.fsa','--uc', fileName[:-4] + '.uc', '--uc_allhits',]
     args = append_flags_to_args(args, globalFlags)
     popen = subprocess.Popen(args, stdout=subprocess.PIPE)
     popen.wait()
@@ -61,7 +61,7 @@ def run_vsearch_exact(fileName):
         fileName {string} -- Path to file
     """
     # setting maxaccepts to 0 disables the limit (searches for all possible matches)
-    args = [vsearch_binary_filename, '--search_exact', fileName, '--db', 'usearch/sequences.fsa','--uc', fileName[:-4] + '.uc', '--uc_allhits']
+    args = [vsearch_binary_filename, '--search_exact', fileName, '--db', 'dumps/sequences.fsa','--uc', fileName[:-4] + '.uc', '--uc_allhits']
     args = append_flags_to_args(args, exactFlags)
     popen = subprocess.Popen(args, stdout=subprocess.PIPE)
     popen.wait()