update DockerFile to make sure container working

SynBioDex · Sep 11, 2024 · 14e29ba · 14e29ba
1 parent 225772e
commit 14e29ba
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Showing 3 changed files with 4 additions and 6 deletions.
diff --git a/flask/docker/Dockerfile b/flask/docker/Dockerfile
@@ -12,7 +12,7 @@ RUN ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime && \
     dpkg-reconfigure -f noninteractive tzdata
 
 RUN apt-get update && \
-    apt-get install -y software-properties-common && \
+    apt-get install -y software-properties-common coreutils && \
     add-apt-repository ppa:deadsnakes/ppa && \
     apt-get update && \
     apt-get install -y git cron python3.11 python3-pip python3.11-venv && \
@@ -38,5 +38,4 @@ RUN mkdir /mnt/config && \
     rm -rf dumps && \
     ln -s /mnt/data dumps
 
-CMD "./start.sh"
-
+CMD sh -c ". ../../jammy/bin/activate && ./start.sh"
diff --git a/flask/docker/Dockerfile-synbiohub b/flask/docker/Dockerfile-synbiohub
@@ -40,5 +40,4 @@ RUN mkdir /mnt/config && \
 
 ADD config-synbiohub.json /mnt/config/config.json
 
-CMD "./start.sh"
-
+CMD sh -c ". ../../jammy/bin/activate && ./start.sh"
diff --git a/flask/start.sh b/flask/start.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 
 echo "Starting SBOLExplorer"
-
+source ../../jammy/bin/activate
 export FLASK_APP=explorer.py
 export FLASK_ENV=development
 flask run --host=0.0.0.0 --port=13162
Original file line number	Diff line number	Diff line change
Expand Up		@@ -40,5 +40,4 @@ RUN mkdir /mnt/config && \

		ADD config-synbiohub.json /mnt/config/config.json

		CMD "./start.sh"

		CMD sh -c ". ../../jammy/bin/activate && ./start.sh"