updated the converter.py

SynBioDex · Dec 17, 2024 · a7d32b4 · a7d32b4
1 parent 8f65e6c
commit a7d32b4
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Showing 6 changed files with 8 additions and 2 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.github/.DS_Store b/.github/.DS_Store
diff --git a/excel2sbol/.DS_Store b/excel2sbol/.DS_Store
diff --git a/excel2sbol/excel2sbol/converter.py b/excel2sbol/excel2sbol/converter.py
@@ -1,15 +1,20 @@
 # from ensurepip import version
 import excel2sbol.compiler as e2s
+import os
 
-
-def converter(file_path_in, file_path_out, sbol_version=3, homespace="http://examples.org/", file_format=None):
+def converter(file_path_in, file_path_out, sbol_version=3, homespace="http://examples.org/", file_format=None,  username=None, password=None, url = None):
     """Convert a given excel file to SBOL
 
     Args:
         file_path_in (string): path to excel file
         file_path_out (string): desired path to sbol file
         sbol_version (int): sbol version number, defaults to 3
     """
+    if username is not None and password is not None and url is not None:
+        # print(username, password, url)
+        os.environ["SBOL_USERNAME"] = username
+        os.environ["SBOL_PASSWORD"] = password
+        os.environ["SBOL_URL"] = url
     col_read_df, to_convert, compiled_sheets, version_info, homespace2 = e2s.initialise(file_path_in)
 
     if len(homespace2) > 0:
@@ -33,3 +38,4 @@ def converter(file_path_in, file_path_out, sbol_version=3, homespace="http://exa
     e2s.column_parse(to_convert, compiled_sheets, sht_convert_dict,
                      dict_of_objs, col_read_df, doc, file_path_out,
                      sbol_version=sbol_version, file_format=file_format)
+
diff --git a/excel2sbol/resources/.DS_Store b/excel2sbol/resources/.DS_Store
diff --git a/excel2sbol/tests/.DS_Store b/excel2sbol/tests/.DS_Store