remove df at entropy step

SydneyBioX · Aug 5, 2024 · e1677e3 · e1677e3
1 parent d479eba
commit e1677e3
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: SpatialFeatures
 Title: Entropy-based subcellular and supercellular features for molecule-resolved spatial omics datasets
-Version: 0.0.3
+Version: 0.0.4
 Authors@R: c(
     person("Shila", "Ghazanfar", email = "[email protected]", role = c("aut", "cre", "ctb")),
     person("Guan", "Gui", role = "ctb")

diff --git a/R/EntropyMatrix_utils.R b/R/EntropyMatrix_utils.R
@@ -121,7 +121,9 @@ matrix_entropy <- function(mat, nCores = 1) {
     compute_cell_entropy(cell_segments_mat)
   }, mc.cores = nCores)
 
-  df_entropy <- as.data.frame(do.call(cbind, results))
+  # commented out by shila
+  # df_entropy <- as.data.frame(do.call(cbind, results))
+  df_entropy <- do.call(cbind, results)
   rownames(df_entropy) <- rownames(mat)
   colnames(df_entropy) <- cells