fix read_vcf running issue

ShixiangWang · Dec 12, 2023 · bf28521 · bf28521
1 parent c68bda0
commit bf28521
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/read_vcf.R b/R/read_vcf.R
@@ -81,7 +81,7 @@ read_vcf <- function(vcfs, samples = NULL,
   # Annotate gene symbol
   gene_dt <- get_genome_annotation("gene", genome_build = genome_build)
 
-  if (verbose) message("Annotating mutations to first matched gene based on database ", gene_file, "...")
+  if (verbose) message("Annotating mutations to first matched gene based on database of ", genome_build, "...")
   dt <- gene_dt[, c("chrom", "start", "end", "gene_name", "gene_id")]
   data.table::setkey(dt, "chrom", "start", "end")