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jbedia committed Apr 7, 2017
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2 changes: 1 addition & 1 deletion inst/doc/Climate_Services_2017.R
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Expand Up @@ -18,7 +18,7 @@ knitr::opts_chunk$set(echo = TRUE,
library(loadeR.ECOMS)

## ---- eval=FALSE---------------------------------------------------------
# devtools::install_github("SantanderMetGroup/[email protected].7")
# devtools::install_github("SantanderMetGroup/[email protected].8")

## ------------------------------------------------------------------------
library(transformeR)
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4 changes: 2 additions & 2 deletions inst/doc/Climate_Services_2017.Rmd
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---
title: "Seasonal Predictions of Fire Weather Index: Paving the Way for their operational applicability in Mediterranean Europe"
subtitle: "Climate Services paper, 2017. Companion R examples"
subtitle: "Companion R examples of the paper published in Climate Services (2017, DOI:10.1016/j.cliser.2017.04.001)"
author: "J. Bedia & M. Iturbide"
date: "`r Sys.Date()`"
abstract: |
Expand Down Expand Up @@ -65,7 +65,7 @@ library(loadeR.ECOMS)
The package `transformeR` allows performing climate data transformations, including Principal Component/EOF analysis, subsetting, aggregation, regridding/interpolation... In this vignette, the subsetting, aggregation, detrending and visualization capabilitites of `transformeR` will be used.

```{r, eval=FALSE}
devtools::install_github("SantanderMetGroup/[email protected].7")
devtools::install_github("SantanderMetGroup/[email protected].8")
```

```{r}
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29 changes: 14 additions & 15 deletions inst/doc/Climate_Services_2017.html
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Expand Up @@ -12,7 +12,7 @@

<meta name="author" content="J. Bedia &amp; M. Iturbide" />

<meta name="date" content="2017-04-04" />
<meta name="date" content="2017-04-07" />

<title>Seasonal Predictions of Fire Weather Index: Paving the Way for their operational applicability in Mediterranean Europe</title>

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<h1 class="title toc-ignore">Seasonal Predictions of Fire Weather Index: Paving the Way for their operational applicability in Mediterranean Europe</h1>
<h3 class="subtitle"><em>Climate Services paper, 2017. Companion R examples</em></h3>
<h3 class="subtitle"><em>Companion R examples of the paper published in Climate Services (2017, <a href="DOI:10.1016/j.cliser.2017.04.001" class="uri">DOI:10.1016/j.cliser.2017.04.001</a>)</em></h3>
<h4 class="author"><em>J. Bedia &amp; M. Iturbide</em></h4>
<h4 class="date"><em>2017-04-04</em></h4>
<h4 class="date"><em>2017-04-07</em></h4>
<div class="abstract">
<p class="abstract">Abstract</p>
<p>This is a worked example that reproduces the steps followed in Bedia et al. 2017 using the R-package <code>fireDanger</code>, that contains functions for computing the different components of the Fire Weather Index System (FWI, van Wagner 1987) from station and numerical climate model data.</p>
Expand Down Expand Up @@ -113,7 +113,7 @@ <h2>Installing the R Climate Processing Bundle from the Santander MetGroup</h2>
<p>In case any problems arise with the installation at this point, see this <a href="https://github.com/SantanderMetGroup/loadeR/wiki/Installation">help guide</a> at the loadeR’s wiki page.</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(loadeR.ECOMS)</code></pre></div>
<p>The package <code>transformeR</code> allows performing climate data transformations, including Principal Component/EOF analysis, subsetting, aggregation, regridding/interpolation… In this vignette, the subsetting, aggregation, detrending and visualization capabilitites of <code>transformeR</code> will be used.</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">devtools::<span class="kw">install_github</span>(<span class="st">&quot;SantanderMetGroup/[email protected].7&quot;</span>)</code></pre></div>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">devtools::<span class="kw">install_github</span>(<span class="st">&quot;SantanderMetGroup/[email protected].8&quot;</span>)</code></pre></div>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(transformeR)</code></pre></div>
<p>The package <code>downscaleR</code> implements several methods of bias correction and perfect-prog downscaling. It will be used for the bias-correction experiment illustrated in the article.</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">devtools::<span class="kw">install_github</span>(<span class="st">&quot;SantanderMetGroup/[email protected]&quot;</span>)</code></pre></div>
Expand Down Expand Up @@ -416,25 +416,24 @@ <h1>Session Information</h1>
## [5] visualizeR_0.2-1 sm_2.2-5.4
## [7] downscaleR_2.0-1 loadeR.ECOMS_1.2.2
## [9] loadeR_1.0-7 loadeR.java_1.1-0
## [11] rJava_0.9-8 transformeR_0.0.7
## [11] rJava_0.9-8 transformeR_0.0.8
## [13] abind_1.4-5
##
## loaded via a namespace (and not attached):
## [1] Rcpp_0.12.10 plyr_1.8.4 bitops_1.0-6
## [4] tools_3.3.3 vioplot_0.2 boot_1.3-17
## [7] digest_0.6.9 evd_2.3-2 evaluate_0.10
## [10] memoise_1.0.0 lattice_0.20-34 Matrix_1.2-8
## [10] memoise_1.0.0 lattice_0.20-35 Matrix_1.2-8
## [13] yaml_2.1.14 parallel_3.3.3 spam_1.4-0
## [16] akima_0.6-2 withr_1.0.0 stringr_1.0.0
## [19] raster_2.5-8 knitr_1.15.1 mapplots_1.5
## [22] fields_8.10 devtools_1.12.0 maps_3.1.1
## [25] rprojroot_1.2 grid_3.3.3 dtw_1.18-1
## [28] pbapply_1.3-1 rmarkdown_1.3 sp_1.2-4
## [31] magrittr_1.5 scales_0.4.1 CircStats_0.2-4
## [34] backports_1.0.5 htmltools_0.3.5 MASS_7.3-44
## [37] colorspace_1.2-6 proxy_0.4-17 stringi_1.0-1
## [40] munsell_0.4.3 RCurl_1.95-4.8 verification_1.42
## [43] RcppEigen_0.3.2.9.1</code></pre>
## [19] knitr_1.15.1 mapplots_1.5 fields_8.10
## [22] devtools_1.12.0 maps_3.1.1 rprojroot_1.2
## [25] grid_3.3.3 dtw_1.18-1 pbapply_1.3-1
## [28] rmarkdown_1.3 sp_1.2-4 magrittr_1.5
## [31] scales_0.4.1 CircStats_0.2-4 backports_1.0.5
## [34] htmltools_0.3.5 MASS_7.3-44 colorspace_1.2-6
## [37] proxy_0.4-17 stringi_1.0-1 munsell_0.4.3
## [40] RCurl_1.95-4.8 verification_1.42 RcppEigen_0.3.2.9.1</code></pre>
<hr />
</div>

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4 changes: 2 additions & 2 deletions vignettes/Climate_Services_2017.Rmd
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
---
title: "Seasonal Predictions of Fire Weather Index: Paving the Way for their operational applicability in Mediterranean Europe"
subtitle: "Climate Services paper, 2017. Companion R examples"
subtitle: "Companion R examples of the paper published in Climate Services (2017, DOI:10.1016/j.cliser.2017.04.001)"
author: "J. Bedia & M. Iturbide"
date: "`r Sys.Date()`"
abstract: |
Expand Down Expand Up @@ -65,7 +65,7 @@ library(loadeR.ECOMS)
The package `transformeR` allows performing climate data transformations, including Principal Component/EOF analysis, subsetting, aggregation, regridding/interpolation... In this vignette, the subsetting, aggregation, detrending and visualization capabilitites of `transformeR` will be used.

```{r, eval=FALSE}
devtools::install_github("SantanderMetGroup/[email protected].7")
devtools::install_github("SantanderMetGroup/[email protected].8")
```

```{r}
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