Merge pull request #1535 from Sage-Bionetworks/schematic-126-file-ann…

…otation-storage-update

[SCHEMATIC-126] Update file annotation store process to require filename be present i…

schematic/store/synapse.py

@@ -2250,7 +2250,10 @@ async def add_annotations_to_entities_files(
         manifest_synapse_table_id="",
         annotation_keys: str = "class_label",
     ):
-        """Depending on upload type add Ids to entityId row. Add anotations to connected files.
+        """
+        Depending on upload type add Ids to entityId row. Add anotations to connected
+        files and folders. Despite the name of this function, it also applies to folders.
+
         Args:
             dmge: DataModelGraphExplorer Object
             manifest (pd.DataFrame): loaded df containing user supplied data.
@@ -2295,6 +2298,9 @@ async def add_annotations_to_entities_files(
                 row["entityId"] = manifest_synapse_table_id
                 manifest.loc[idx, "entityId"] = manifest_synapse_table_id
                 entityId = ""
+                # If the row is the manifest table, do not add annotations
+            elif row["entityId"] == manifest_synapse_table_id:
+                entityId = ""
             else:
                 # get the file id of the file to annotate, collected in above step.
                 entityId = row["entityId"]