include api test in workflow #24
Workflow file for this run
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| # Built from: | |
| # https://github.com/Sage-Bionetworks/schematic/blob/develop/.github/workflows/test.yml | |
| name: Test schematic API | |
| on: | |
| push: | |
| branches: ['main'] | |
| pull_request: | |
| branches: ['*'] | |
| workflow_dispatch: # Allow manually triggering the workflow | |
| concurrency: | |
| # cancel the current running workflow from the same branch, PR when a new workflow is triggered | |
| # when the trigger is not a PR but a push, it will use the commit sha to generate the concurrency group | |
| # {{ github.workflow }}: the workflow name is used to generate the concurrency group. This allows you to have more than one workflows | |
| # {{ github.ref_type }}: the type of Git ref object created in the repository. Can be either branch or tag | |
| # {{ github.event.pull_request.number}}: get PR number | |
| # {{ github.sha }}: full commit sha | |
| # credit: https://github.com/Sage-Bionetworks-Workflows/sagetasks/blob/main/.github/workflows/ci.yml | |
| group: >- | |
| ${{ github.workflow }}-${{ github.ref_type }}- | |
| ${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| jobs: | |
| api-test: | |
| runs-on: ubuntu-latest | |
| env: | |
| POETRY_VERSION: 1.3.0 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10"] | |
| steps: | |
| #---------------------------------------------- | |
| # check-out repo and set-up python | |
| #---------------------------------------------- | |
| - name: Check out repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #---------------------------------------------- | |
| # install & configure poetry | |
| #---------------------------------------------- | |
| - name: Install Poetry | |
| run: | | |
| curl -sSL https://install.python-poetry.org \ | |
| | python3 - --version ${{ env.POETRY_VERSION }}; | |
| poetry config virtualenvs.create true; | |
| poetry config virtualenvs.in-project true; | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
| #---------------------------------------------- | |
| # install dependencies and root project | |
| #---------------------------------------------- | |
| - name: Install dependencies and root project | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --all-extras | |
| #---------------------------------------------- | |
| # run API test suite | |
| #---------------------------------------------- | |
| - name: Run all API tests, excluding submission and benchmarks | |
| env: | |
| SYNAPSE_ACCESS_TOKEN: ${{ secrets.SYNAPSE_ACCESS_TOKEN }} | |
| SERVICE_ACCOUNT_CREDS: ${{ secrets.SERVICE_ACCOUNT_CREDS }} | |
| run: > | |
| source .venv/bin/activate; | |
| pytest --durations=0 -m "schematic_api and not submission and not rule_benchmark" | |
| - name: Run all submission tests | |
| env: | |
| SYNAPSE_ACCESS_TOKEN: ${{ secrets.SYNAPSE_ACCESS_TOKEN }} | |
| SERVICE_ACCOUNT_CREDS: ${{ secrets.SERVICE_ACCOUNT_CREDS }} | |
| run: > | |
| source .venv/bin/activate; | |
| pytest -m "submission" |