Update configs to nested json structure

dcc/ADKP/dca_config.json

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+{
+  "dcc": {
+    "project_name": "AD Knowledge Portal",
+    "synapse_asset_view": "syn51324810",
+    "data_model_url": "https://raw.githubusercontent.com/adknowledgeportal/data-models/main/divco.data.model.v1.jsonld",
+    "template_menu_config_file": "dcc/ADKP/dca-template-config.json",
+    "logo_location": "dcc/ADKP/ADKnowledgePortal.png",
+    "logo_link": "https://adknowledgeportal.synapse.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "excel",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "file_only",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/BTC/dca_config.json

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+{
+  "dcc": {
+    "project_name": "BTC DCC",
+    "synapse_asset_view": "syn51407795",
+    "data_model_url": "https://raw.githubusercontent.com/Sage-Bionetworks/btc-data-models/main/btc.model.jsonld",
+    "template_menu_config_file": "dcc/BTC/dca-template-config.json",
+    "5": {},
+    "6": {}
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e72",
+    "sidebar_col": "#191920"
+  },
+  "schematic": {
+    "manifest_get.output_format": "excel",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/EL/dca_config.json

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+{
+  "dcc": {
+    "project_name": "EL",
+    "synapse_asset_view": "syn51753858",
+    "data_model_url": "https://raw.githubusercontent.com/Sage-Bionetworks/ELITE-data-models/main/example.model.jsonld",
+    "template_menu_config_file": "dcc/EL/dca-template-config.json",
+    "5": {},
+    "6": {}
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "excel",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/GF/dca_config.json

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+{
+  "dcc": {
+    "project_name": "Gray Foundation",
+    "synapse_asset_view": "syn28142805",
+    "data_model_url": "https://raw.githubusercontent.com/gf-dcc/data-model/v1.1.0-rc/GF.jsonld",
+    "template_menu_config_file": "dcc/GF/dca-template-config.json",
+    "5": {},
+    "6": {}
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "google_sheet",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": true,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/HTAN/dca_config.json

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+{
+  "dcc": {
+    "project_name": "HTAN All Projects",
+    "synapse_asset_view": "syn20446927",
+    "data_model_url": "https://raw.githubusercontent.com/ncihtan/data-models/main/HTAN.model.jsonld",
+    "template_menu_config_file": "dcc/HTAN/dca-template-config.json",
+    "logo_location": "dcc/HTAN/HTAN_text_logo.png",
+    "logo_link": "https://humantumoratlas.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#605ca8",
+    "secondary_col": "#5F008C",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "google_sheet",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "file_only",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/MC2/dca_config.json

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+{
+  "dcc": {
+    "project_name": "Cancer Complexity Knowledge Portal - Database",
+    "synapse_asset_view": "syn27210848",
+    "data_model_url": "https://raw.githubusercontent.com/mc2-center/data-models/main/mc2.model.jsonld",
+    "template_menu_config_file": "dcc/MC2/dca-template-config.json",
+    "logo_location": "dcc/MC2/cckp_logo.png",
+    "logo_link": "https://cancercomplexity.synapse.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#407BA0",
+    "secondary_col": "#5BB0B5",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "excel",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": false,
+    "model_submit.table_manipulation": "upsert",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/NF-OSI/dca_config.json

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+{
+  "dcc": {
+    "project_name": "NF-OSI",
+    "synapse_asset_view": "syn16858331",
+    "data_model_url": "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/v8.0.1/NF.jsonld",
+    "template_menu_config_file": "dcc/NF-OSI/dca-template-config.json",
+    "5": {},
+    "6": {}
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "google_sheet",
+    "manifest_get.use_annotations": true,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": true
+  }
+}

dcc/VEOIBD/dca_config.json

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+{
+  "dcc": {
+    "project_name": "VEOIBD",
+    "synapse_asset_view": "syn51397378",
+    "data_model_url": "https://raw.githubusercontent.com/VEOIBD/data_models/main/veoibd.data.model.jsonld",
+    "template_menu_config_file": "dcc/VEOIBD/dca-template-config.json",
+    "logo_location": "dcc/VEOIBD/VEOIBD Logo.png",
+    "logo_link": "https://veoibd.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e72",
+    "sidebar_col": "#191920"
+  },
+  "schematic": {
+    "manifest_get.output_format": "excel",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": true,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "upsert",
+    "model_submit.manifest_record_type": "file_only",
+    "model_submit.hide_blanks": false
+  }
+}

dcc/demo/dca-template-config-v2.json

@@ -0,0 +1,31 @@
+{
+  "manifest_schemas": [
+    {
+      "display_name": "Biospecimen",
+      "schema_name": "Biospecimen",
+      "type": "record"
+    },
+    {
+      "display_name": "Bulk RNA-seq Assay",
+      "schema_name": "BulkRNA-seqAssay",
+      "type": "file"
+    },
+    {
+      "display_name": "MockComponent",
+      "schema_name": "MockComponent",
+      "type": "record"
+    },
+    {
+      "display_name": "Other Assay",
+      "schema_name": "OtherAssay",
+      "type": "file"
+    },
+    {
+      "display_name": "Patient",
+      "schema_name": "Patient",
+      "type": "record"
+    }
+  ],
+  "service_version": "v23.9.3",
+  "schema_version": ""
+}

dcc/demo/dca_config.json

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+{
+  "dcc": {
+    "project_name":"DCA Demo",
+    "synapse_asset_view":"syn33715412",
+    "data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld",
+    "data_model_info": "",
+    "template_menu_config_file":"dcc/demo/dca-template-config.json",
+    "logo_location":"dcc/demo/Logo_Sage_Logomark.png",
+    "logo_link":"https://synapse.org",
+    "dcc_help_link": "",
+    "portal_help_link": ""
+  },
+  "dca": {
+    "use_compliance_dashboard":false,
+    "primary_col":"#2a668d",
+    "secondary_col":"#184e71",
+    "sidebar_col":"#191919"
+  },
+  "schematic": {
+    "manifest_generate": {
+      "output_format":"google_sheet",
+      "use_annotations":false
+    },
+    "model_validate": {
+      "restrict_rules":false
+    },
+    "model_submit": {
+      "use_schema_labels":true,
+      "table_manipulation":"replace",
+      "manifest_record_type":"table_and_file",
+      "hide_blanks":false
+    }
+  }
+}

dcc/demo_upsert/dca_config.json

@@ -0,0 +1,25 @@
+{
+  "dcc": {
+    "project_name": "DCA Demo Upsert",
+    "synapse_asset_view": "syn51489635",
+    "data_model_url": "https://raw.githubusercontent.com/Sage-Bionetworks/schematic/develop/tests/data/example.model.jsonld",
+    "template_menu_config_file": "dcc/demo_upsert/dca-template-config.json",
+    "5": {},
+    "6": {}
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "excel",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": false,
+    "model_submit.table_manipulation": "upsert",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}

test/smoke_test_dca_config.json

@@ -1 +1,25 @@
-{"project_name":"DCA Smoke Test","synapse_asset_view":"syn52701135","data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld","template_menu_config_file":"dcc/demo/dca-template-config.json","logo_location":"dcc/demo/Logo_Sage_Logomark.png","logo_link":"https://synapse.org","manifest_output_format":"google_sheet","manifest_use_annotations":false,"validate_restrict_rules":false,"submit_use_schema_labels":true,"submit_table_manipulation":"replace","submit_manifest_record_type":"table_and_file","submit_hide_blanks":false,"use_compliance_dashboard":false,"primary_col":"#2a668d","secondary_col":"#184e71","sidebar_col":"#191919"}
+{
+  "dcc": {
+    "project_name": "DCA Smoke Test",
+    "synapse_asset_view": "syn52701135",
+    "data_model_url": "https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld",
+    "template_menu_config_file": "dcc/demo/dca-template-config.json",
+    "logo_location": "dcc/demo/Logo_Sage_Logomark.png",
+    "logo_link": "https://synapse.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "google_sheet",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}

test/test_cross_manifest_validation_type_dca_config.json

@@ -1 +1,25 @@
-{"project_name":"DCA cross manifest validation","synapse_asset_view":"syn52786230","data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld","template_menu_config_file":"dcc/demo/dca-template-config.json","logo_location":"dcc/demo/Logo_Sage_Logomark.png","logo_link":"https://synapse.org","manifest_output_format":"google_sheet","manifest_use_annotations":false,"validate_restrict_rules":false,"submit_use_schema_labels":true,"submit_table_manipulation":"replace","submit_manifest_record_type":"file_only","submit_hide_blanks":false,"use_compliance_dashboard":false,"primary_col":"#2a668d","secondary_col":"#184e71","sidebar_col":"#191919"}
+{
+  "dcc": {
+    "project_name": "DCA cross manifest validation",
+    "synapse_asset_view": "syn52786230",
+    "data_model_url": "https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld",
+    "template_menu_config_file": "dcc/demo/dca-template-config.json",
+    "logo_location": "dcc/demo/Logo_Sage_Logomark.png",
+    "logo_link": "https://synapse.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "google_sheet",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "file_only",
+    "model_submit.hide_blanks": false
+  }
+}

test/test_load_test_dca_config.json

@@ -1 +1,25 @@
-{"project_name":"FAIR Data Load Test","synapse_asset_view":"syn52392410","data_model_url":"https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld","template_menu_config_file":"dcc/demo/dca-template-config.json","logo_location":"dcc/demo/Logo_Sage_Logomark.png","logo_link":"https://synapse.org","manifest_output_format":"google_sheet","manifest_use_annotations":false,"validate_restrict_rules":false,"submit_use_schema_labels":true,"submit_table_manipulation":"replace","submit_manifest_record_type":"table_and_file","submit_hide_blanks":false,"use_compliance_dashboard":false,"primary_col":"#2a668d","secondary_col":"#184e71","sidebar_col":"#191919"}
+{
+  "dcc": {
+    "project_name": "FAIR Data Load Test",
+    "synapse_asset_view": "syn52392410",
+    "data_model_url": "https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld",
+    "template_menu_config_file": "dcc/demo/dca-template-config.json",
+    "logo_location": "dcc/demo/Logo_Sage_Logomark.png",
+    "logo_link": "https://synapse.org"
+  },
+  "dca": {
+    "use_compliance_dashboard": false,
+    "primary_col": "#2a668d",
+    "secondary_col": "#184e71",
+    "sidebar_col": "#191919"
+  },
+  "schematic": {
+    "manifest_get.output_format": "google_sheet",
+    "manifest_get.use_annotations": false,
+    "model_validate.restrict_rules": false,
+    "model_submit.use_schema_labels": true,
+    "model_submit.table_manipulation": "replace",
+    "model_submit.manifest_record_type": "table_and_file",
+    "model_submit.hide_blanks": false
+  }
+}