fix IRS URLs script

scripts/updates/fix_IRS_spectra_links.py

@@ -0,0 +1,26 @@
+from scripts.ingests.utils import load_simpledb
+from astropy.table import Table
+
+
+SAVE_DB = True  # save the data files in addition to modifying the .db file
+RECREATE_DB = True  # recreates the .db file from the data files
+
+# LOAD THE DATABASE
+db = load_simpledb('SIMPLE.db', recreatedb=RECREATE_DB)
+
+
+#  link to live google sheet
+link = 'https://docs.google.com/spreadsheets/d/e/2PACX-1vQG5cGkI2aHPHD4b6ZZPTU4jjQMirU_z-yhl5ElI3p6nCIufIL64crC-yFalF58OauWHxmYvEKR_isY/pub?gid=0&single=true&output=csv'
+columns = ['source', 'original_spectrum', 'fixed_spectrum']
+spectra_link_table = Table.read(link, format='ascii', data_start=2, names=columns, guess=False, fast_reader=False, delimiter=',')
+
+for row in spectra_link_table:
+    # t = db.query(db.Spectra).filter(db.Spectra.c.original_spectrum == row['original_spectrum']).astropy()
+    # print(t['spectrum'])
+    with db.engine.connect() as conn:
+        conn.execute(db.Spectra.update().where(db.Spectra.c.original_spectrum == row['original_spectrum']).values(spectrum=row['fixed_spectrum']))
+        conn.commit()
+
+# WRITE THE JSON FILES
+if SAVE_DB:
+    db.save_database(directory='data/')