pages build and deployment #29
pages-build-deployment
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Logging at level: debug Configuration file: /github/workspace/./_config.yml GitHub Pages: github-pages v231 GitHub Pages: jekyll v3.9.5 Theme: jekyll-theme-primer Theme source: /usr/local/bundle/gems/jekyll-theme-primer-0.6.0 Requiring: jekyll-github-metadata Requiring: jekyll-seo-tag Requiring: jemoji Requiring: jekyll-coffeescript Requiring: jekyll-commonmark-ghpages Requiring: jekyll-gist Requiring: jekyll-github-metadata Requiring: jekyll-paginate Requiring: jekyll-relative-links Requiring: jekyll-optional-front-matter Requiring: jekyll-readme-index Requiring: jekyll-default-layout Requiring: jekyll-titles-from-headings GitHub Metadata: Initializing... Source: /github/workspace/. Destination: /github/workspace/./_site Incremental build: disabled. Enable with --incremental Generating... EntryFilter: excluded /README.md EntryFilter: excluded /Gemfile.lock EntryFilter: excluded /Gemfile Reading: modules/nextflow/_posts/2000-01-01-nextflow.md Reading: modules/nextflow/_posts/2000-01-07-acknowledgements.md Reading: modules/nextflow/_posts/2000-01-08-hand-on-exercises.md Reading: modules/nextflow/_posts/2000-01-05-channels-operators.md Reading: modules/nextflow/_posts/2000-01-02-open-science.md Reading: modules/nextflow/_posts/2000-01-04-processes-channels.md Reading: modules/nextflow/_posts/2000-01-06-seqera-platform.md Reading: modules/nextflow/_posts/2000-01-03-workflows.md Reading: modules/containers/_posts/2024-02-23-Containers.md Reading: modules/cholera-case-study/_posts/2024-02-23-Cholera-Case-Study.md Reading: modules/galaxy-introduction/_posts/2024-02-14-COLLECTIONS.md Reading: modules/galaxy-introduction/_posts/2024-02-16-RESOURCES.md Reading: modules/galaxy-introduction/_posts/2024-02-13-INTRODUCTION.md Reading: modules/galaxy-introduction/_posts/2024-02-15-WORKFLOWS.md Reading: modules/package-management-conda/_posts/2024-02-23-Package-Management-Conda.md Reading: modules/r-programming/_posts/2024-02-23-R-Programming.md Reading: modules/unix-linux-introduction/_posts/2024-02-01-intro-to-cli.md Reading: modules/unix-linux-introduction/_posts/2024-02-04-working-with-remote-computers.md Reading: modules/unix-linux-introduction/_posts/2024-02-02-task-two.md Generating: JekyllOptionalFrontMatter::Generator finished in 6.7085e-05 seconds. Generating: JekyllReadmeIndex::Generator finished in 6.4751e-05 seconds. Generating: Jekyll::Paginate::Pagination finished in 2.315e-06 seconds. Generating: JekyllRelativeLinks::Generator finished in 0.00025132 seconds. Generating: JekyllDefaultLayout::Generator finished in 0.001431194 seconds. Requiring: kramdown-parser-gfm Generating: JekyllTitlesFromHeadings::Generator finished in 0.007964563 seconds. Rendering: modules/nextflow/_posts/2000-01-01-nextflow.md Pre-Render Hooks: modules/nextflow/_posts/2000-01-01-nextflow.md Rendering Markup: modules/nextflow/_posts/2000-01-01-nextflow.md Rendering Layout: modules/nextflow/_posts/2000-01-01-nextflow.md Layout source: site GitHub Metadata: Generating for SANBI-SA/pathogen-genomics-march-2024 GitHub Metadata: Calling @client.pages("SANBI-SA/pathogen-genomics-march-2024", {}) Rendering: modules/nextflow/_posts/2000-01-02-open-science.md Pre-Render Hooks: modules/nextflow/_posts/2000-01-02-open-science.md Rendering Markup: modules/nextflow/_posts/2000-01-02-open-science.md Rendering Layout: modules/nextflow/_posts/2000-01-02-open-science.md Layout source: site Rendering: modules/nextflow/_posts/2000-01-03-workflows.md Pre-Render Hooks: modules/nextflow/_posts/2000-01-03-workflows.md Rendering Markup: modules/nextflow/_posts/2000-01-03-workflows.md Rendering Layout: modules/nextflow/_posts/2000-01-03-workflows.md Layout source: site Rendering: modules/nextflow/_posts/2000-01-04-processes-channels.md Pre-Render Hooks: modules/nextflow/_posts/2000-01-04-processes-channels.md Rendering Markup: modules/nextflow/_posts/2000-01-04-processes-channels.md Rendering Layout: modules/nextflow/_posts/2000-01-04-processes-channels.md Layout source: site Rendering: modules/nextflow/_posts/2000-01-05-channels-operators.md Pre-Render Hooks: modules/nex
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The github-pages gem can't satisfy your Gemfile's dependencies. If you want to use a different Jekyll version or need additional dependencies, consider building Jekyll site with GitHub Actions: https://jekyllrb.com/docs/continuous-integration/github-actions/
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