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Update 2024-09-14-additional-resources.md
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tralynca authored Oct 3, 2024
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Expand Up @@ -13,10 +13,12 @@ While each section of this course has introduced learning resources, some don't
* [Primer on Phylogenetics](http://phyloseminar.org/recorded.html) - search for "Primer" in the recordings of the PhyloSeminars

* [Glittr](https://glittr.org/?per_page=25&sort_by=stargazers&sort_direction=desc) - Git repositories with bioinformatics training material
<br>

## Resources from the Course modules

To make it easier to find resources, here are the resources mentioned elsewhere on the course website.
<br>

### Shell Resources

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* [Introduction to Shell scripting](https://sambitsinha.hashnode.dev/linux-shell-scripting-basics-an-introduction-to-shell-scripting-in-linux) and [Intermediate Shell Scripting](https://sambitsinha.hashnode.dev/intermediate-shell-scripting-in-linux) from [Sambit Sinha](https://sambitsinha.hashnode.dev/?source=top_nav_blog_home)

* <a href="https://unix.stackexchange.com/questions/306111/what-is-the-difference-between-the-bash-operators-vs-vs-vs">What is the difference between the Bash operators [[ vs [ vs ( vs ((?</a>
<br>

### Conda Resources

* [Introduction to Conda](https://carpentries-incubator.github.io/introduction-to-conda-for-data-scientists/) from The Carpentries
<br>

### Nextflow Resources

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* [Nextflow training](https://training.nextflow.io/)

* [Nextflow and nf-core Mentorships](https://nf-co.re/mentorships)
<br>

### R Resources

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* [Data Explorer for Exploratory Data Analysis](https://cran.r-project.org/web/packages/DataExplorer/readme/README.html)

* [R for Data Science](https://r4ds.had.co.nz/)
<br>

### Galaxy Resources

[See the section on Galaxy](/modules/galaxy-introduction/RESOURCES/)


<br>

### File Formats

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* [Short- and long read sequencing 1](https://www.futurelearn.com/info/courses/exploring-the-landscape-of-antibiotic-resistance-in-microbiomes/0/steps/267389)

* [Short- and long read sequencing 2](https://www.futurelearn.com/info/courses/making-sense-of-genomic-data-covid-19-web-based-bioinformatics/0/steps/319346)

<br>

### Variant Calling

* [Variant calling 1](https://www.futurelearn.com/info/courses/making-sense-of-genomic-data-covid-19-web-based-bioinformatics/0/steps/319530)

* [Variant calling 2](https://www.futurelearn.com/info/courses/bioinformatics-for-biologists-analysing-and-interpreting-genomics-datasets/0/steps/388465)

<br>

### Introduction to the Command line
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