pages build and deployment #192
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Logging at level: debug Configuration file: /github/workspace/./_config.yml GitHub Pages: github-pages v232 GitHub Pages: jekyll v3.10.0 Theme: jekyll-theme-primer Theme source: /usr/local/bundle/gems/jekyll-theme-primer-0.6.0 Requiring: jekyll-github-metadata Requiring: jekyll-seo-tag Requiring: jemoji Requiring: jekyll-coffeescript Requiring: jekyll-commonmark-ghpages Requiring: jekyll-gist Requiring: jekyll-github-metadata Requiring: jekyll-paginate Requiring: jekyll-relative-links Requiring: jekyll-optional-front-matter Requiring: jekyll-readme-index Requiring: jekyll-default-layout Requiring: jekyll-titles-from-headings GitHub Metadata: Initializing... Source: /github/workspace/. Destination: /github/workspace/./_site Incremental build: disabled. Enable with --incremental Generating... EntryFilter: excluded /Gemfile EntryFilter: excluded /README.md EntryFilter: excluded /Gemfile.lock Reading: modules/additional-resources/_posts/2024-09-14-additional-resources.md Reading: modules/additional-resources/_posts/2024-09-15-galaxy.md Reading: modules/unix-linux-introduction/_posts/2024-09-03-introduction-to-unix.md Reading: modules/unix-linux-introduction/_posts/2024-09-04-CLI-exercises.md Reading: modules/mapping-alignment/_posts/2024-09-03-mapping-alignment.md Reading: modules/mapping-alignment/_posts/2024-09-04-alignment-variant-calling.md Reading: modules/phylogenetics/_posts/2024-09-03-phylogenetics.md Reading: modules/hands-on/_posts/2024-09-05-hands-on.md Reading: modules/pathogenwatch/_posts/2024-09-02-Practical-aspects-of-Pathogen-Genomics.md Reading: modules/pathogenwatch/_posts/2024-09-05-Pathogenwatch-and-Microreact.md Reading: modules/pathogenwatch/_posts/2024-09-06-Strengthening-Health-Systems.md Reading: modules/variant-calling/_posts/2024-09-03-variant-calling.md Reading: modules/quality-control/_posts/2024-09-03-quality-control.md Reading: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md Reading: modules/kleborate/_posts/2024-09-04-virulence-typing-1.md Reading: modules/kleborate/_posts/2024-09-05-kaptive.md Reading: modules/kleborate/_posts/2024-09-06-viulence-typing-2.md Reading: modules/kleborate/_posts/2024-09-07-AMR.md Reading: modules/kleborate/_posts/2024-09-08-kleborate-tutorial.md Reading: modules/package-management-conda/_posts/2024-09-03-introduction-to-package-management.md Generating: JekyllOptionalFrontMatter::Generator finished in 0.000133962 seconds. Generating: JekyllReadmeIndex::Generator finished in 5.7958e-05 seconds. Generating: Jekyll::Paginate::Pagination finished in 5.26e-06 seconds. Generating: JekyllRelativeLinks::Generator finished in 0.000383522 seconds. Generating: JekyllDefaultLayout::Generator finished in 0.001625478 seconds. Requiring: kramdown-parser-gfm Generating: JekyllTitlesFromHeadings::Generator finished in 0.007782088 seconds. Rendering: modules/pathogenwatch/_posts/2024-09-02-Practical-aspects-of-Pathogen-Genomics.md Pre-Render Hooks: modules/pathogenwatch/_posts/2024-09-02-Practical-aspects-of-Pathogen-Genomics.md Rendering Markup: modules/pathogenwatch/_posts/2024-09-02-Practical-aspects-of-Pathogen-Genomics.md Rendering Layout: modules/pathogenwatch/_posts/2024-09-02-Practical-aspects-of-Pathogen-Genomics.md Layout source: site GitHub Metadata: Generating for SANBI-SA/klebsiella_2024 GitHub Metadata: Calling @client.pages("SANBI-SA/klebsiella_2024", {}) Rendering: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md Pre-Render Hooks: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md Rendering Liquid: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md github-pages 232 | Error: Liquid syntax error (line 1): Unknown tag 'pdf'
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build
The github-pages gem can't satisfy your Gemfile's dependencies. If you want to use a different Jekyll version or need additional dependencies, consider building Jekyll site with GitHub Actions: https://jekyllrb.com/docs/continuous-integration/github-actions/
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