Logging at level: debug Configuration file: /github/workspace/./_config.yml GitHub Pages: github-pages v232 GitHub Pages: jekyll v3.10.0 Theme: jekyll-theme-primer Theme source: /usr/local/bundle/gems/jekyll-theme-primer-0.6.0 Requiring: jekyll-github-metadata Requiring: jekyll-seo-tag Requiring: jemoji Requiring: jekyll-coffeescript Requiring: jekyll-commonmark-ghpages Requiring: jekyll-gist Requiring: jekyll-github-metadata Requiring: jekyll-paginate Requiring: jekyll-relative-links Requiring: jekyll-optional-front-matter Requiring: jekyll-readme-index Requiring: jekyll-default-layout Requiring: jekyll-titles-from-headings GitHub Metadata: Initializing... Source: /github/workspace/. Destination: /github/workspace/./_site Incremental build: disabled. Enable with --incremental Generating... EntryFilter: excluded /Gemfile.lock EntryFilter: excluded /Gemfile EntryFilter: excluded /README.md Reading: modules/mapping-alignment/_posts/2024-09-03-mapping-alignment.md Reading: modules/pathogenwatch/_posts/2024-09-05-Pathogenwatch-and-Microreact.md Reading: modules/quality-control/_posts/2024-09-03-quality-control.md Reading: modules/variant-calling/_posts/2024-09-03-variant-calling.md Reading: modules/unix-linux-introduction/_posts/2024-09-03-introduction-to-unix.md Reading: modules/unix-linux-introduction/_posts/2024-09-04-CLI-exercises.md Reading: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md Reading: modules/kleborate/_posts/2024-09-04-virulence-typing-1.md Reading: modules/kleborate/_posts/2024-09-05-kaptive.md Reading: modules/kleborate/_posts/2024-09-06-viulence-typing-2.md Reading: modules/kleborate/_posts/2024-09-07-AMR.md Reading: modules/kleborate/_posts/2024-09-08-kleborate-tutorial.md Reading: modules/package-management-conda/_posts/2024-09-03-introduction-to-package-management.md Reading: modules/phylogenetics/_posts/2024-09-03-phylogenetics.md Reading: modules/phylogenetics/_posts/2024-09-04-recombination.md Generating: JekyllOptionalFrontMatter::Generator finished in 4.5976e-05 seconds. Generating: JekyllReadmeIndex::Generator finished in 5.1978e-05 seconds. Generating: Jekyll::Paginate::Pagination finished in 3.987e-06 seconds. Generating: JekyllRelativeLinks::Generator finished in 0.000366376 seconds. Generating: JekyllDefaultLayout::Generator finished in 0.001640093 seconds. Requiring: kramdown-parser-gfm Generating: JekyllTitlesFromHeadings::Generator finished in 0.007892647 seconds. Rendering: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md Pre-Render Hooks: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md Rendering Liquid: modules/kleborate/_posts/2024-09-03-klebsiella-genomics.md github-pages 232 | Error: Liquid syntax error (line 1): Unknown tag 'pdf'