Update pre-commit repo versions

Renumics · Feb 6, 2024 · c7baed0 · c7baed0
1 parent e714a30
commit c7baed0
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Showing 5 changed files with 31 additions and 46 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -25,7 +25,7 @@ repos:
 
     # "official" pre-commit hooks
     - repo: https://github.com/pre-commit/pre-commit-hooks
-      rev: v4.4.0
+      rev: v4.5.0
       hooks:
           - id: trailing-whitespace
             exclude: \.secret\.
@@ -42,22 +42,22 @@ repos:
 
     # third-pary hooks
     - repo: https://github.com/psf/black
-      rev: 23.1.0
+      rev: 24.1.1
       hooks:
           - id: black
           - id: black-jupyter
     - repo: https://github.com/pre-commit/mirrors-prettier
-      rev: v2.7.1
+      rev: v4.0.0-alpha.8
       hooks:
           - id: prettier
             exclude: (\.secret\.)|(pnpm-lock.yaml)
     - repo: https://github.com/pre-commit/mirrors-eslint
-      rev: v8.34.0
+      rev: v9.0.0-alpha.2
       hooks:
           - id: eslint
             files: src
     - repo: https://github.com/python-jsonschema/check-jsonschema
-      rev: 0.21.0
+      rev: 0.28.0
       hooks:
           - id: check-github-actions
           - id: check-github-workflows
@@ -67,6 +67,6 @@ repos:
           - id: shellcheck
           - id: shfmt
     - repo: https://github.com/kynan/nbstripout
-      rev: 0.6.1
+      rev: 0.7.1
       hooks:
           - id: nbstripout
diff --git a/renumics/spotlight/dataset/__init__.py b/renumics/spotlight/dataset/__init__.py
@@ -393,18 +393,15 @@ def __delitem__(self, item: Union[str, IndexType, Indices1dType]) -> None:
     @overload
     def __getitem__(
         self, item: Union[str, Tuple[str, Indices1dType], Tuple[Indices1dType, str]]
-    ) -> np.ndarray:
-        ...
+    ) -> np.ndarray: ...
 
     @overload
-    def __getitem__(self, item: IndexType) -> Dict[str, Optional[OutputType]]:
-        ...
+    def __getitem__(self, item: IndexType) -> Dict[str, Optional[OutputType]]: ...
 
     @overload
     def __getitem__(
         self, item: Union[Tuple[str, IndexType], Tuple[IndexType, str]]
-    ) -> Optional[OutputType]:
-        ...
+    ) -> Optional[OutputType]: ...
 
     def __getitem__(
         self,
@@ -463,20 +460,19 @@ def __setitem__(
         self,
         item: Union[str, Tuple[str, Indices1dType], Tuple[Indices1dType, str]],
         value: Union[ColumnInputType, Iterable[ColumnInputType]],
-    ) -> None:
-        ...
+    ) -> None: ...
 
     @overload
-    def __setitem__(self, item: IndexType, value: Dict[str, ColumnInputType]) -> None:
-        ...
+    def __setitem__(
+        self, item: IndexType, value: Dict[str, ColumnInputType]
+    ) -> None: ...
 
     @overload
     def __setitem__(
         self,
         item: Union[Tuple[str, IndexType], Tuple[IndexType, str]],
         value: ColumnInputType,
-    ) -> None:
-        ...
+    ) -> None: ...
 
     def __setitem__(
         self,
@@ -635,16 +631,14 @@ def keys(self) -> List[str]:
         return list(self._column_names)
 
     @overload
-    def iterrows(self) -> Iterable[Dict[str, Optional[OutputType]]]:
-        ...
+    def iterrows(self) -> Iterable[Dict[str, Optional[OutputType]]]: ...
 
     @overload
     def iterrows(
         self, column_names: Union[str, Iterable[str]]
     ) -> Union[
         Iterable[Dict[str, Optional[OutputType]]], Iterable[Optional[OutputType]]
-    ]:
-        ...
+    ]: ...
 
     def iterrows(
         self, column_names: Optional[Union[str, Iterable[str]]] = None
@@ -1902,12 +1896,10 @@ def insert_row(self, index: IndexType, values: Dict[str, ColumnInputType]) -> No
         self._update_generation_id()
 
     @overload
-    def pop(self, item: str) -> np.ndarray:
-        ...
+    def pop(self, item: str) -> np.ndarray: ...
 
     @overload
-    def pop(self, item: IndexType) -> Dict[str, Optional[OutputType]]:
-        ...
+    def pop(self, item: IndexType) -> Dict[str, Optional[OutputType]]: ...
 
     def pop(
         self, item: Union[str, IndexType]

diff --git a/renumics/spotlight/dtypes/conversion.py b/renumics/spotlight/dtypes/conversion.py
@@ -114,12 +114,12 @@ def __init__(self, value: NormalizedValue, dtype: dtypes.DType) -> None:
 N = TypeVar("N", bound=NormalizedValue)
 
 Converter = Callable[[N, dtypes.DType], ConvertedValue]
-_converters_table: Dict[
-    Type[NormalizedValue], Dict[str, List[Converter]]
-] = defaultdict(lambda: defaultdict(list))
-_simple_converters_table: Dict[
-    Type[NormalizedValue], Dict[str, List[Converter]]
-] = defaultdict(lambda: defaultdict(list))
+_converters_table: Dict[Type[NormalizedValue], Dict[str, List[Converter]]] = (
+    defaultdict(lambda: defaultdict(list))
+)
+_simple_converters_table: Dict[Type[NormalizedValue], Dict[str, List[Converter]]] = (
+    defaultdict(lambda: defaultdict(list))
+)
 
 
 def register_converter(

diff --git a/renumics/spotlight/embeddings/decorator.py b/renumics/spotlight/embeddings/decorator.py
@@ -20,8 +20,7 @@
 @overload
 def embed(
     dtype: Union[Literal["image", "Image"], Image], *, name: Optional[str] = None
-) -> Callable[[EmbedImageFunc], EmbedImageFunc]:
-    ...
+) -> Callable[[EmbedImageFunc], EmbedImageFunc]: ...
 
 
 @overload
@@ -30,8 +29,7 @@ def embed(
     *,
     name: Optional[str] = None,
     sampling_rate: int,
-) -> Callable[[EmbedArrayFunc], EmbedArrayFunc]:
-    ...
+) -> Callable[[EmbedArrayFunc], EmbedArrayFunc]: ...
 
 
 @overload
@@ -43,15 +41,13 @@ def embed(
     ],
     *,
     name: Optional[str] = None,
-) -> Callable[[EmbedArrayFunc], EmbedArrayFunc]:
-    ...
+) -> Callable[[EmbedArrayFunc], EmbedArrayFunc]: ...
 
 
 @overload
 def embed(
     dtype: Any, *, name: Optional[str] = None, sampling_rate: Optional[int] = None
-) -> Callable[[EmbedFunc], EmbedFunc]:
-    ...
+) -> Callable[[EmbedFunc], EmbedFunc]: ...
 
 
 def embed(

diff --git a/renumics/spotlight/layout/__init__.py b/renumics/spotlight/layout/__init__.py
@@ -288,8 +288,7 @@ def similaritymap(
     color_by_column: Optional[str] = None,
     size_by_column: Optional[str] = None,
     filter: bool = False,
-) -> Similaritymap:
-    ...
+) -> Similaritymap: ...
 
 
 @overload
@@ -303,8 +302,7 @@ def similaritymap(
     *,
     umap_metric: Optional[_UmapMetric] = None,
     umap_balance: Optional[_UmapBalance] = None,
-) -> Similaritymap:
-    ...
+) -> Similaritymap: ...
 
 
 @overload
@@ -317,8 +315,7 @@ def similaritymap(
     filter: bool = False,
     *,
     pca_normalization: Optional[_PCANormalization] = None,
-) -> Similaritymap:
-    ...
+) -> Similaritymap: ...
 
 
 def similaritymap(