correctly convert pd.CategoricalDType #665
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| name: CI | |
| on: push | |
| # As long as we use local actions, checkout should be made in workflow before | |
| # and not in the local actions. Otherwise, no action file found. | |
| # Checkout with `fetch-depth: 0` is needed by `poetry-dynamic-versioning` to get | |
| # the right package version. | |
| # `MATRIX` environment variable is set by the local `generate-matrix` action. | |
| jobs: | |
| # Prepare stage | |
| prepare-python: | |
| name: '🐍 Prepare Python' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| id: setup-poetry | |
| uses: ./.github/actions/setup-poetry | |
| outputs: | |
| version: ${{ steps.setup-poetry.outputs.package-version }} | |
| pip-cache-dir: ${{ steps.setup-poetry.outputs.pip-cache-dir }} | |
| prepare-node: | |
| name: '⬢ Prepare Node.js' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '⬢ Set up pnpm environment' | |
| uses: ./.github/actions/setup-pnpm | |
| # Check stage | |
| check-pr: | |
| name: '🔍 Check if pull request' | |
| permissions: | |
| pull-requests: read | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: '🔍 Check if pull request' | |
| id: check-pr | |
| uses: 8BitJonny/[email protected] | |
| with: | |
| filterOutClosed: true | |
| outputs: | |
| is-pr: ${{ steps.check-pr.outputs.pr_found }} | |
| number: ${{ steps.check-pr.outputs.number }} | |
| check: | |
| name: '🔍 Check' | |
| needs: | |
| - prepare-python | |
| - prepare-node | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '⬢ Set up pnpm environment' | |
| id: setup | |
| uses: ./.github/actions/setup-pnpm | |
| - name: Run shellcheck | |
| if: success() || steps.setup.outcome == 'success' | |
| uses: ludeeus/action-shellcheck@master | |
| with: | |
| ignore_paths: .venv node_modules | |
| - name: Audit dependencies | |
| if: success() || steps.setup.outcome == 'success' | |
| run: make audit | |
| - name: Check code formatting | |
| if: success() || steps.setup.outcome == 'success' | |
| run: make check-format | |
| - name: Check code types | |
| if: success() || steps.setup.outcome == 'success' | |
| run: make typecheck | |
| - name: Lint code | |
| if: success() || steps.setup.outcome == 'success' | |
| run: make lint | |
| # Build stage | |
| build-test-matrix: | |
| name: '🧱 Build test matrix' | |
| needs: | |
| - check-pr | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: '🧱 Build test matrix for pull request' | |
| if: needs.check-pr.outputs.is-pr == 'true' | |
| uses: druzsan/setup-matrix@v1 | |
| with: | |
| matrix: | | |
| os: ubuntu-latest, | |
| python-version: 3.8 3.9 3.10 3.11 | |
| - name: '🧱 Build test matrix for release' | |
| if: env.MATRIX == '' && startsWith(github.ref, 'refs/tags/v') | |
| uses: druzsan/setup-matrix@v1 | |
| with: | |
| matrix: | | |
| os: ubuntu-latest windows-latest macos-latest, | |
| python-version: 3.8 3.9 3.10 3.11 | |
| - name: '🧱 Build test matrix for main branch' | |
| if: env.MATRIX == '' && github.ref == 'refs/heads/main' | |
| uses: druzsan/setup-matrix@v1 | |
| with: | |
| matrix: | | |
| os: ubuntu-latest, | |
| python-version: 3.8 3.9 3.10 3.11 | |
| include: | | |
| os: windows-latest python-version: 3.8, | |
| os: macos-latest python-version: 3.8 | |
| - name: '🧱 Build test matrix for development branch' | |
| if: env.MATRIX == '' | |
| uses: druzsan/setup-matrix@v1 | |
| with: | |
| matrix: | | |
| os: ubuntu-latest, | |
| python-version: 3.8 | |
| - name: Print matrix | |
| run: echo "$MATRIX" | yq -P '{"matrix":.}' | |
| - name: Set output | |
| id: set-matrix | |
| run: echo "matrix=$MATRIX" >> $GITHUB_OUTPUT | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| build-docs: | |
| name: '📝 Build API docs' | |
| needs: | |
| - prepare-python | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '📝 Build API docs' | |
| run: make docs | |
| - name: '📥 Store API docs' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: docs-${{ needs.prepare-python.outputs.version }} | |
| path: build/docs/api/ | |
| if-no-files-found: error | |
| build-datasets: | |
| name: '🗃 Build datasets' | |
| needs: | |
| - prepare-python | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '🗃 Build datasets' | |
| if: github.ref != 'refs/heads/main' && !startsWith(github.ref, 'refs/tags/v') | |
| run: make datasets | |
| - name: '🗃🗃 Build all datasets' | |
| if: github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') | |
| run: make all-datasets | |
| - name: '📥 Store datasets' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: datasets-${{ needs.prepare-python.outputs.version }} | |
| path: build/datasets/ | |
| if-no-files-found: error | |
| build-spotlight: | |
| name: '🧱 Build Spotlight' | |
| needs: | |
| - prepare-python | |
| - prepare-node | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry' | |
| uses: ./.github/actions/setup-poetry | |
| with: | |
| install-dependencies: false | |
| - name: '⬢ Set up pnpm environment' | |
| uses: ./.github/actions/setup-pnpm | |
| - name: '🧱 Build frontend' | |
| run: make build-frontend | |
| - name: '📥 Store frontend' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: .frontend-${{ needs.prepare-python.outputs.version }} | |
| path: build/frontend/ | |
| if-no-files-found: error | |
| - name: Build Spotlight | |
| run: make build-wheel | |
| - name: '📥 Store Spotlight' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: renumics-spotlight-${{ needs.prepare-python.outputs.version }} | |
| path: build/dist/renumics_spotlight*.whl | |
| if-no-files-found: error | |
| # Test stage | |
| check-wheel-contents: | |
| name: '🔍 Check wheel contents' | |
| needs: | |
| - prepare-python | |
| - build-spotlight | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '📤 Restore Spotlight Wheel' | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: renumics-spotlight-${{ needs.prepare-python.outputs.version }} | |
| path: build/dist | |
| - name: Check wheel contents | |
| run: make check-wheel | |
| unit-test: | |
| name: '🧪 Unit Test' | |
| needs: | |
| - prepare-python | |
| - prepare-node | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '⬢ Set up pnpm environment' | |
| uses: ./.github/actions/setup-pnpm | |
| - name: Execute unit tests | |
| run: make unit-test | |
| doc-test: | |
| name: '🧪 Doc Test' | |
| needs: | |
| - prepare-python | |
| - prepare-node | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '⬢ Set up pnpm environment' | |
| uses: ./.github/actions/setup-pnpm | |
| - name: Execute doc tests | |
| run: make doc-test | |
| ui-test: | |
| name: '🧪 UI Test' | |
| needs: | |
| - prepare-python | |
| - build-datasets | |
| - build-spotlight | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| browser: | |
| - chrome | |
| - firefox | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry environment' | |
| uses: ./.github/actions/setup-poetry | |
| - name: '📤 Restore datasets' | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: datasets-${{ needs.prepare-python.outputs.version }} | |
| path: build/datasets/ | |
| - name: '📤 Restore pro frontend' | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: .frontend-${{ needs.prepare-python.outputs.version }} | |
| path: build/frontend/ | |
| - name: '🎨 Set up Chrome driver' | |
| if: matrix.browser == 'chrome' | |
| id: setup-chromedriver | |
| with: | |
| chromedriver-version: '115.0.5790.102' | |
| uses: nanasess/setup-chromedriver@v2 | |
| - name: '🦊 Set up Gecko driver' | |
| id: setup-geckodriver | |
| if: matrix.browser == 'firefox' | |
| run: | | |
| curl -s https://api.github.com/repos/mozilla/geckodriver/releases/latest \ | |
| | jq -r '.assets | map(select(.name | test("^geckodriver-v.*-linux64.tar.gz$")))[0].browser_download_url' \ | |
| | xargs wget -O ${{ runner.temp }}/geckodriver.tar.gz | |
| tar -xzf ${{ runner.temp }}/geckodriver.tar.gz -C /usr/local/bin/ | |
| - name: Download screenshots of the last commit on main | |
| continue-on-error: true | |
| env: | |
| AZURE_FOLDER_URL: https://spotlightpublic.blob.core.windows.net/github-public/${{ github.repository }} | |
| run: | | |
| MAIN_COMMITS="$(curl -L \ | |
| -H "Accept: application/vnd.github+json" \ | |
| -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}"\ | |
| -H "X-GitHub-Api-Version: 2022-11-28" \ | |
| https://api.github.com/repos/${{ github.repository }}/commits)" | |
| INDEX=$([ "$GITHUB_REF" = "refs/heads/main" ] && echo 1 || echo 0) | |
| COMMIT_SHA=$(echo "$MAIN_COMMITS" | jq -r ".[$INDEX].sha") | |
| mkdir -p build/ui_tests/old-screenshots | |
| cd build/ui_tests/old-screenshots | |
| curl -fLO ${AZURE_FOLDER_URL}/${COMMIT_SHA}/screenshots/gui-${{ matrix.browser }}.png | |
| - name: '🍱 Test UI on ${{ matrix.browser }}' | |
| run: make ui-test-${{ matrix.browser }} | |
| - name: Prepare GUI screenshots | |
| if: | | |
| success() | |
| || steps.setup-chromedriver.outcome == 'success' | |
| || steps.setup-geckodriver.outcome == 'success' | |
| run: | | |
| mkdir -p build/upload/screenshots | |
| cp build/ui_tests/screenshots/gui*.png build/upload/screenshots | |
| if [ "$GITHUB_REF" = "refs/heads/main" ] | |
| then | |
| touch build/upload/screenshots/.is-main | |
| fi | |
| - name: '📸 Upload GUI screenshots' | |
| if: | | |
| success() | |
| || steps.setup-chromedriver.outcome == 'success' | |
| || steps.setup-geckodriver.outcome == 'success' | |
| uses: LanceMcCarthy/Action-AzureBlobUpload@v2 | |
| with: | |
| connection_string: ${{ secrets.AZURE_CONNECTION_STRING }} | |
| container_name: github-public | |
| source_folder: build/upload/screenshots | |
| destination_folder: ${{ github.repository }}/${{ github.sha }}/screenshots | |
| delete_if_exists: true | |
| - name: '📥 Store UI test on ${{ matrix.browser }} results' | |
| if: | | |
| success() | |
| || steps.setup-chromedriver.outcome == 'success' | |
| || steps.setup-geckodriver.outcome == 'success' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: .ui-test-${{ needs.prepare-python.outputs.version }} | |
| path: build/ui_tests | |
| if-no-files-found: error | |
| integration-test: | |
| name: '🧪 Integration Test' | |
| needs: | |
| - prepare-python | |
| - build-test-matrix | |
| - build-datasets | |
| - build-spotlight | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{fromJson(needs.build-test-matrix.outputs.matrix)}} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '🐍 Set up Poetry' | |
| uses: ./.github/actions/setup-poetry | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| install-dependencies: false | |
| - name: Cache pip cache folder | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ needs.prepare-python.outputs.pip-cache-dir }} | |
| key: pip-cache-${{ runner.os }}-python-${{ matrix.python-version }} | |
| - name: '📤 Restore Spotlight' | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: renumics-spotlight-${{ needs.prepare-python.outputs.version }} | |
| path: build/dist | |
| - name: '📤 Restore datasets' | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: datasets-${{ needs.prepare-python.outputs.version }} | |
| path: build/datasets/ | |
| - name: Upgrade system packages | |
| run: python -m pip install --upgrade pip setuptools wheel | |
| - name: Install Spotlight | |
| id: setup | |
| run: python -m pip install --find-links build/dist/ renumics-spotlight==${{ needs.prepare-python.outputs.version }} | |
| - name: Test Spotlight start (Windows) | |
| if: runner.os == 'Windows' && (success() || steps.setup.outcome == 'success') | |
| run: ./scripts/Test-SpotlightStart.ps1 | |
| - name: Test Spotlight start (Ubuntu, MacOS) | |
| if: runner.os != 'Windows' && (success() || steps.setup.outcome == 'success') | |
| run: | | |
| function teardown { | |
| while kill -INT %% 2>/dev/null; do sleep 0; done # kill all child processes | |
| } | |
| trap teardown EXIT | |
| PORT="5005" | |
| spotlight --host 127.0.0.1 --port $PORT --no-browser data/tables/tallymarks-small.h5 & | |
| URL="http://127.0.0.1:${PORT}" | |
| wget -t20 -w0.5 --retry-connrefused --delete-after $URL | |
| sleep 0.5 | |
| GENERATION_ID=$(wget -qO- "${URL}/api/table/" | jq ".generation_id") | |
| wget --delete-after "${URL}/api/table/number/42?generation_id=${GENERATION_ID}" | |
| - name: Install pytest | |
| id: setup-tests | |
| run: python -m pip install pytest | |
| - name: Execute integration tests | |
| if: success() || steps.setup-tests.outcome == 'success' | |
| run: pytest --durations=5 tests/integration | |
| # Release stage | |
| release: | |
| name: '🚀 Release Spotlight' | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| needs: | |
| - prepare-python | |
| - prepare-node | |
| - check-pr | |
| - check | |
| - build-test-matrix | |
| - build-docs | |
| - build-datasets | |
| - build-spotlight | |
| - check-wheel-contents | |
| - unit-test | |
| - integration-test | |
| - ui-test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: '📤 Restore core Spotlight' | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: renumics-spotlight-${{ needs.prepare-python.outputs.version }} | |
| path: dist | |
| - name: '🚀 Publish Spotlight to PyPI' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |