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Template for chemical grouping#157

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mattjmeier wants to merge 14 commits intomainR-ODAF/R-ODAF_Health_Canada:mainfrom chemical_groupingR-ODAF/R-ODAF_Health_Canada:chemical_groupingCopy head branch name to clipboard

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Commits

Commits on Oct 17, 2023

• Template for chemical grouping

  mattjmeier

  committed
  3e908cc

• Title

  mattjmeier

  committed
  d88cfd6

Commits on Jan 25, 2024

• Collapse by gene symbol - REVIEW!!

  mattjmeier

  committed
  5387283

• Chemical grouping

  mattjmeier

  committed
  5455f11

Commits on May 3, 2024

• latest analysis

  mattjmeier

  committed
  24fdecb

Commits on May 8, 2024

• add titles to PCA plots

  LMBradford

  committed
  5061726

• add DEG scaling for all, top, and low dose dendros

  LMBradford

  committed
  5df0c79

Commits on May 17, 2024

• some scaling of DEGs, not on thresholded stuff

  LMBradford

  committed
  e19f06c

• No changes to the code, but now it goes in a reasonable order without duplication

  LMBradford

  committed
  7847503

• add PCAs and ER biomarker PCA

  LMBradford

  committed
  adfddb6

• er biomarker HC + fixes for report knitting

  LMBradford

  committed
  20d2ed2

• more scaling

  LMBradford

  committed
  9a0c0a0

Commits on Jun 11, 2024

• fix typo that removed estradiol from ER biomarker plots

  LMBradford

  committed
  9c410fe

• add ER gene plots for top doses of active chems (>1% DEGs)

  LMBradford

  committed
  b541505