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Update tests.yml for reorganized repo
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Change test data download so input files are in correct place for reorganized repo.
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LMBradford authored Dec 29, 2023
1 parent 426dd5a commit a4ac366
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions .github/workflows/tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -76,8 +76,7 @@ jobs:
run: |
ls -alht # What is in the "working directory"?
git clone https://github.com/EHSRB-BSRSE-Bioinformatics/test-data
rm -r data # Remove existing directory before replacing w/ test data
rm -r config # Remove existing directory before replacing w/ test data
rm -r inputs # Remove existing directory before replacing w/ test data
mv test-data/${{ matrix.seq_type}}/* ./
wget https://github.com/EHSRB-BSRSE-Bioinformatics/unify_temposeq_manifests/raw/main/output_manifests/Human_S1500_1.2_standardized.csv
- name: Build snakemake environment
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