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Simplify and polish enrichment view
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Removes tabs and makes charts smaller to fit in one screen.
Cleans up lots of little outstanding issues.

Related to Issue #29.
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JacobsonMT committed Mar 16, 2018
1 parent af8322e commit 82a4fe0
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9 changes: 9 additions & 0 deletions gotrack/pom.xml
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<version>2.21.1</version>
</dependency>

<!-- https://mvnrepository.com/artifact/org.projectlombok/lombok -->
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<version>1.16.20</version>
<scope>provided</scope>
</dependency>


</dependencies>

<repositories>
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package ubc.pavlab.gotrack.analysis;

import jersey.repackaged.com.google.common.collect.Lists;
import lombok.Getter;
import lombok.NoArgsConstructor;
import lombok.Setter;
import ubc.pavlab.gotrack.model.Aspect;

import java.util.List;

/**
* Created by mjacobson on 14/03/18.
*/
@Getter
@Setter
@NoArgsConstructor
public class EnrichmentAnalysisOptions {

private int minAnnotatedPopulation = 5; // minimum geneset size a specific term must have to be included in results
private int maxAnnotatedPopulation = 200; // maximum geneset size a specific term must have to be included in results
private MultipleTestCorrection multipleTestCorrection = MultipleTestCorrection.BH; // method of multiple tests correction
private double threshold = 0.05; // tEither p-value cutoff if using Bonferroni or FDR level if using BH step-up
private List<Aspect> aspects = Lists.newArrayList( Aspect.values() ); // Aspect restriction
}
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