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Removes tabs and makes charts smaller to fit in one screen. Cleans up lots of little outstanding issues. Related to Issue #29.
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gotrack/src/main/java/ubc/pavlab/gotrack/analysis/EnrichmentAnalysisOptions.java
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package ubc.pavlab.gotrack.analysis; | ||
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import jersey.repackaged.com.google.common.collect.Lists; | ||
import lombok.Getter; | ||
import lombok.NoArgsConstructor; | ||
import lombok.Setter; | ||
import ubc.pavlab.gotrack.model.Aspect; | ||
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import java.util.List; | ||
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/** | ||
* Created by mjacobson on 14/03/18. | ||
*/ | ||
@Getter | ||
@Setter | ||
@NoArgsConstructor | ||
public class EnrichmentAnalysisOptions { | ||
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private int minAnnotatedPopulation = 5; // minimum geneset size a specific term must have to be included in results | ||
private int maxAnnotatedPopulation = 200; // maximum geneset size a specific term must have to be included in results | ||
private MultipleTestCorrection multipleTestCorrection = MultipleTestCorrection.BH; // method of multiple tests correction | ||
private double threshold = 0.05; // tEither p-value cutoff if using Bonferroni or FDR level if using BH step-up | ||
private List<Aspect> aspects = Lists.newArrayList( Aspect.values() ); // Aspect restriction | ||
} |
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