[not for merge] DESC release branch #4105
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name: Parsl | |
on: | |
pull_request: | |
types: | |
- opened | |
- synchronize | |
jobs: | |
main-test-suite: | |
strategy: | |
matrix: | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
runs-on: ubuntu-20.04 | |
timeout-minutes: 60 | |
steps: | |
- uses: actions/checkout@master | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Collect Job Information | |
id: job-info | |
run: | | |
echo "Python Version: ${{ matrix.python-version }}" >> ci_job_info.txt | |
echo "CI Triggering Event: ${{ github.event_name }}" >> ci_job_info.txt | |
echo "Triggering Git Ref: ${{ github.ref }}" >> ci_job_info.txt | |
echo "Triggering Git SHA: ${{ github.sha }}" >> ci_job_info.txt | |
echo "Workflow Run: ${{ github.run_number }}" >> ci_job_info.txt | |
echo "Workflow Attempt: ${{ github.run_attempt }}" >> ci_job_info.txt | |
as_ascii="$(echo "${{ github.ref_name }}" | perl -pe "s/[^A-z0-9-]+/-/g; s/^-+|-+\$//g; s/--+/-/g;")" | |
echo "as-ascii=$as_ascii" >> $GITHUB_OUTPUT | |
- name: Non-requirements based install | |
run: | | |
# libpython3.5: make workqueue binary installer happy | |
# mpich: required by radical executor | |
sudo apt-get update -q | |
sudo apt-get install -qy libpython3.5 mpich | |
- name: setup virtual env | |
run: | | |
make virtualenv | |
source .venv/bin/activate | |
- name: make deps clean_coverage | |
run: | | |
source .venv/bin/activate | |
make deps | |
make clean_coverage | |
- name: make test | |
run: | | |
source .venv/bin/activate | |
# temporary; until test-matrixification | |
export PARSL_TEST_PRESERVE_NUM_RUNS=7 | |
make test | |
ln -s .pytest/parsltest-current test_runinfo | |
- name: Documentation checks | |
run: | | |
source .venv/bin/activate | |
pip install .[docs] | |
sudo apt-get install -y pandoc | |
cd docs | |
test ! -e stubs | |
# check we can build the docs without warnings | |
PYTHONPATH=/tmp/cctools/lib/python3.8/site-packages make SPHINXOPTS=-W html | |
cd .. | |
# assert that none of the runs in this test have put an ERROR message into a | |
# database manager log file or monitoring router log file. It would be better if | |
# the tests themselves failed immediately when there was a monitoring error, but | |
# in the absence of that, this is a dirty way to check. | |
bash -c '! grep ERROR .pytest/parsltest-current/runinfo*/*/database_manager.log' | |
bash -c '! grep ERROR .pytest/parsltest-current/runinfo*/*/monitoring_router.log' | |
# temporary; until test-matrixification | |
rm -f .pytest/parsltest-current test_runinfo | |
- name: Checking parsl-visualize | |
run: | | |
source .venv/bin/activate | |
sudo apt-get install -y graphviz | |
pip install .[monitoring,visualization] | |
parsl/tests/test-viz.sh | |
# config_local_test comes after viz so that the large monitoring.db | |
# created by `make test` is still around | |
- name: make config_local_test | |
run: | | |
source .venv/bin/activate | |
make config_local_test | |
- name: make coverage | |
run: | | |
source .venv/bin/activate | |
make coverage | |
- name: Archive runinfo logs | |
if: ${{ always() }} | |
uses: actions/upload-artifact@v4 | |
with: | |
name: runinfo-${{ matrix.python-version }}-${{ steps.job-info.outputs.as-ascii }}-${{ github.sha }} | |
path: | | |
runinfo/ | |
.pytest/ | |
ci_job_info.txt | |
compression-level: 9 | |
gen3: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ ubuntu-latest ] | |
py: [ "3.11" ] | |
CC: [ gcc ] | |
CXX: [ g++ ] | |
defaults: | |
run: | |
# cf. https://github.com/conda-incubator/setup-miniconda#important | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
repository: LSSTDESC/gen3_workflow | |
- uses: actions/checkout@master | |
with: | |
path: ./parsl-repo | |
- name: Setup conda | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: stack | |
python-version: "3.11" | |
condarc-file: etc/.condarc | |
- name: Install conda deps | |
run: | | |
conda info | |
conda list | |
conda install -y mamba | |
mamba install -y --file conda_requirements.txt | |
conda info | |
conda list | |
- name: Install workflow packages | |
run: | | |
# pip install -U --no-deps 'parsl[monitoring,workqueue] @ git+https://github.com/parsl/parsl@desc' | |
pip install -U --no-deps './parsl-repo[monitoring,workqueue]' | |
pip install typeguard tblib paramiko dill pyzmq globus-sdk sqlalchemy_utils | |
conda install -c conda-forge ndcctools=7.6.1=py311h689c632_0 --no-deps | |
- name: Clone gen3_workflow checkout the branch | |
shell: bash -l {0} | |
run: | | |
echo pwd | |
pwd | |
echo ls | |
ls | |
echo Cloning gen3_workflow repo | |
git clone https://github.com/LSSTDESC/gen3_workflow | |
echo declaring gen3_workflow to eups | |
eups declare gen3_workflow -r ${PWD}/gen3_workflow -t current | |
cd gen3_workflow | |
git fetch origin master:TESTING | |
git checkout TESTING | |
- name: Run the test pipelines | |
run: | | |
setup gen3_workflow | |
(eups list lsst_distrib) 2>&1 | grep -v "Unknown tag" | |
(eups list gen3_workflow) 2>&1 | grep -v "Unknown tag" | |
cd tests | |
pytest test_query_workflow.py test_bps_restart.py | |
- name: Archive test logs | |
if: ${{ always() }} | |
uses: actions/upload-artifact@v2 | |
with: | |
name: testinfo-${{ matrix.python-version }} | |
path: gen3_workflow/ | |