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Add PaddleScience docker #396

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Add PaddleScience docker #396

wants to merge 6 commits into from

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sanbuphy
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@sanbuphy sanbuphy commented Jun 19, 2023 •
edited by luotao1
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#377

HydrogenSulfate and others added 4 commits May 31, 2023 11:25
@HydrogenSulfate
Update doc for release/1.0 (PaddlePaddle#356)
bb8b9a3 
* update links README.md and index.md from latest to release/1.0(test=document_fix)

* update install_setup.md

* update docstrings
@HydrogenSulfate
Cherry pick panorama (PaddlePaddle#360)
08a9beb 
* fix panorama.png
@HydrogenSulfate
[Cherry-pick] Add acknowledgement (PaddlePaddle#393)
a9f0610 
* update setup.py

* add acknowledgement
@sanbuphy
add docker
58eb27f
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paddle-bot bot commented Jun 19, 2023

Thanks for your contribution!

@sanbuphy sanbuphy changed the title add docker Add PaddleScience docker Jun 19, 2023
@co63oc
Update index.md (PaddlePaddle#399)
2cb945d 
证书常用是奖品类型
@luotao1 luotao1 added the HappyOpenSource 快乐开源活动issue与PR label Jun 20, 2023
@HydrogenSulfate
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你好，build之后尝试训练，但遇到了下面截图里的问题，找不到GPU
image

image

@sanbuphy
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你好，build之后尝试训练，但遇到了下面截图里的问题，找不到GPU image

image

启动docker的时候带上了 --gpus all了嘛

@HydrogenSulfate
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HydrogenSulfate commented Jun 29, 2023 •
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你好，build之后尝试训练，但遇到了下面截图里的问题，找不到GPU image
image

启动docker的时候带上了 --gpus all了嘛

我的docker版本比较老，不支持 --gpus all 参数，所以我用的是 nvidia-docker run，理论上后者应该也能获取到GPU吧，但是就是检测不到

@sanbuphy
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你好，build之后尝试训练，但遇到了下面截图里的问题，找不到GPU image
image

启动docker的时候带上了 --gpus all了嘛

我的docker版本比较老，不支持 --gpus all 参数，所以我用的是 nvidia-docker run，理论上后者应该也能获取到GPU吧，但是就是检测不到

进去后nvidia-smi是正常的吗，如果是正常的很可能是paddle的安装问题，run check也不行吗

@HydrogenSulfate
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你好，build之后尝试训练，但遇到了下面截图里的问题，找不到GPU image
image

启动docker的时候带上了 --gpus all了嘛

我的docker版本比较老，不支持 --gpus all 参数，所以我用的是 nvidia-docker run，理论上后者应该也能获取到GPU吧，但是就是检测不到

进去后nvidia-smi是正常的吗，如果是正常的很可能是paddle的安装问题，run check也不行吗

用不了nvidia-smi

HydrogenSulfate
HydrogenSulfate requested changes Jun 30, 2023
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docker/Dockerfile
Comment on lines +3 to +9
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
g++ gcc cmake wget xz-utils git make zlib1g-dev openssl libssl-dev libffi-dev libeigen3-dev sqlite3 libsqlite3-dev libx11-dev libgl1-mesa-dev bzip2 libbz2-dev liblzma-dev\
# pymesh dependency
libeigen3-dev libgmp-dev libgmpxx4ldbl libmpfr-dev libboost-dev libboost-thread-dev libtbb-dev && \
apt-get clean autoclean && \
rm -rf /var/lib/apt/lists/*
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能不用&&和反斜杠，改成多行 RUN吗？

docker/Dockerfile

RUN python3 -m pip install --upgrade pip && pip install pysdf open3d db-sqlite3

#install PaddleScience and pymesh
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#后加空格

docker/Dockerfile
echo 'export LD_LIBRARY_PATH="/usr/local/cuda/lib64/"' >> ~/.bashrc && \
python3 -m pip install paddlepaddle-gpu==0.0.0.post116 -f https://www.paddlepaddle.org.cn/whl/linux/gpu/develop.html && \
cd PaddleScience && pip3 install -r requirements.txt && pip install -e . && \
rm -rf /src
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文件结尾换行

docker/README.md Outdated
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docker 使用方法写到 docs/zh/install_setup.md 中

docker/run.sh
Comment on lines +1 to +11
git clone https://github.com/PaddlePaddle/PaddleScience.git

cd PaddleScience && git checkout -b develop 6839369 && \
export PYTHONPATH=$PWD:$PYTHONPATH && \
cd examples/bracket && \
wget https://paddle-org.bj.bcebos.com/paddlescience/datasets/bracket/bracket_data.tar && \
tar -xvf bracket_data.tar

cd ..
docker build . -t paddlescience:latest
docker run --gpus all -it -v ./:/work paddlescience
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@HydrogenSulfate HydrogenSulfate Jun 30, 2023 •
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  1. 可以不用 && 和 \ 压行
  2. 文件末尾换行

@HydrogenSulfate HydrogenSulfate changed the base branch from release/1.0 to develop July 1, 2023 06:57
@sanbuphy sanbuphy closed this Jul 1, 2023
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@sanbuphy @HydrogenSulfate @luotao1 @co63oc