Merge pull request #15 from jiaan-yu/mRNA-exp

Add tool LocaliseFolder

janis_unix/tools/__init__.py

@@ -11,3 +11,4 @@
 from .uncompressarchive import UncompressArchive
 from .transposetsv import TransposeTsv
 from .gatherfilestofolder import GatherFilesToFolder
+from .localisefolder import LocaliseFolder

janis_unix/tools/localisefolder.py

@@ -0,0 +1,46 @@
+from janis_core import (
+    Array,
+    File,
+    ToolInput,
+    ToolOutput,
+    Filename,
+    InputSelector,
+    ToolArgument,
+    Directory,
+    String,
+)
+
+from .unixtool import UnixTool
+
+
+class LocaliseFolder(UnixTool):
+    def tool(self):
+        return "LocaliseFolder"
+
+    def friendly_name(self):
+        return "LocaliseFolder"
+
+    def base_command(self):
+        return None
+
+    def inputs(self):
+        return [
+            ToolInput(
+                "dir",
+                Directory,
+                position=3,
+            ),
+        ]
+
+    def outputs(self):
+        return [ToolOutput("out", Directory, selector=InputSelector("dir"))]
+
+    def arguments(self):
+        return [
+            ToolArgument("cp", position=1, shell_quote=False),
+            ToolArgument("-r", position=2, shell_quote=False),
+            ToolArgument(".", position=4, shell_quote=False),
+        ]
+
+    def bind_metadata(self):
+        self.metadata.documentation = """localise folder"""