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v0.4.3 release #68

Merged
merged 19 commits into from
Dec 5, 2023
Merged

v0.4.3 release #68

merged 19 commits into from
Dec 5, 2023

Commits on Nov 7, 2023

  1. More explicit header expectations (might solve empty row problems) 

    Signed-off-by: smlmbrt <[email protected]>
    @smlmbrt
    smlmbrt committed Nov 7, 2023
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  2. Ensure sample overlap between datasets (that there should be no data … 

    …loss)

Signed-off-by: smlmbrt <[email protected]>
    @smlmbrt
    smlmbrt committed Nov 7, 2023
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  3. Changes: 

    - Check probability of the sample coming from any population as a proxy for outlier status via PCs
- Only run the PC-by-PC stratification check if there are over 20 target samples.

These checks will be false positives if the samples are from a population that isn't in the reference.

Signed-off-by: smlmbrt <[email protected]>
    @smlmbrt
    smlmbrt committed Nov 7, 2023
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Commits on Nov 17, 2023

  1. handle HTTP connection exceptions

    @nebfield
    nebfield committed Nov 17, 2023
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  2. Merge pull request #66 from PGScatalog/fix_download_reset 

    handle HTTP connection exceptions
    @nebfield
    nebfield authored Nov 17, 2023
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Commits on Nov 28, 2023

  1. fix assert which fails when no matches are found

    @nebfield
    nebfield committed Nov 28, 2023
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  2. clarify log message

    @nebfield
    nebfield committed Nov 28, 2023
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  3. Merge pull request #67 from PGScatalog/fix_combine_assert 

    remove assert in `match_combine`
    @nebfield
    nebfield authored Nov 28, 2023
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  4. bump for patch

    @nebfield
    nebfield committed Nov 28, 2023
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  5. Merge pull request #64 from PGScatalog/fix_singlesample_ancestry 

    Handle single samples in ancestry_analysis
    @nebfield
    nebfield authored Nov 28, 2023
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Commits on Nov 29, 2023

  1. fix numeric IIDs

    @nebfield
    nebfield committed Nov 29, 2023
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  2. Merge branch 'dev' into fix_numeric_iids

    @nebfield
    nebfield authored Nov 29, 2023
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  3. re-add header=0

    @nebfield
    nebfield committed Nov 29, 2023
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  4. finish comment

    @nebfield
    nebfield committed Nov 29, 2023
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  5. add link to log

    @nebfield
    nebfield committed Nov 29, 2023
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  6. check for chr prefix in samplesheet

    @nebfield
    nebfield committed Nov 29, 2023
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  7. fix missing chromosomes

    @nebfield
    nebfield committed Nov 29, 2023
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Commits on Dec 5, 2023

  1. Merge pull request #69 from PGScatalog/fix_numeric_iids 

    fix numeric IIDs
    @smlmbrt
    smlmbrt authored Dec 5, 2023
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  2. Merge pull request #70 from PGScatalog/check_chr_prefix 

    Check chr prefix in samplesheet
    @smlmbrt
    smlmbrt authored Dec 5, 2023
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