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Fixing GenerateData random number default #57

Fixing GenerateData random number default

Fixing GenerateData random number default #57

Workflow file for this run

name: Algorithm Analysis
on:
push:
branches:
- 'main'
- 'analysis/**'
jobs:
build:
runs-on: ubuntu-latest
continue-on-error: false
strategy:
fail-fast: false
steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
- name: Set up R
uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- name: Install R dependencies
uses: r-lib/actions/setup-r-dependencies@v2
with:
packages: |
any::plyr
any::dplyr
any::tidyverse
any::data.table
any::ggplot2
- name: Generate fitting data
run: |
pip install pytest
python -m pytest -m slow --saveFileName test_output.csv --SNR 10 30 50 100 200 --fitCount 300 --saveDurationFileName test_duration.csv
- name: Generate figures
run: Rscript --vanilla tests/IVIMmodels/unit_tests/analyze.r test_output.csv test_duration.csv
- name: Upload raw data
uses: actions/upload-artifact@v3
with:
name: Raw data
path: |
test_output.csv
test_duration.csv
- name: Upload figures
uses: actions/upload-artifact@v3
with:
name: Fit figures
path: |
D.pdf
f.pdf
Dp.pdf
D_limited.pdf
f_limited.pdf
Dp_limited.pdf
durations.pdf
curve_plot.pdf
fitted_curves.pdf