Fixing GenerateData random number default #57
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name: Algorithm Analysis | |
on: | |
push: | |
branches: | |
- 'main' | |
- 'analysis/**' | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
continue-on-error: false | |
strategy: | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt | |
- name: Set up R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- name: Install R dependencies | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
packages: | | |
any::plyr | |
any::dplyr | |
any::tidyverse | |
any::data.table | |
any::ggplot2 | |
- name: Generate fitting data | |
run: | | |
pip install pytest | |
python -m pytest -m slow --saveFileName test_output.csv --SNR 10 30 50 100 200 --fitCount 300 --saveDurationFileName test_duration.csv | |
- name: Generate figures | |
run: Rscript --vanilla tests/IVIMmodels/unit_tests/analyze.r test_output.csv test_duration.csv | |
- name: Upload raw data | |
uses: actions/upload-artifact@v3 | |
with: | |
name: Raw data | |
path: | | |
test_output.csv | |
test_duration.csv | |
- name: Upload figures | |
uses: actions/upload-artifact@v3 | |
with: | |
name: Fit figures | |
path: | | |
D.pdf | |
f.pdf | |
Dp.pdf | |
D_limited.pdf | |
f_limited.pdf | |
Dp_limited.pdf | |
durations.pdf | |
curve_plot.pdf | |
fitted_curves.pdf |