Cohort Definition Validation Feature API #1929

Draft

charhart wants to merge 60 commits intoOHDSI:masterfrom charhart:annotation2.0

+2,278

Commits on Feb 1, 2021

Added Annotation Code
jduke99
committed

Commits on Mar 2, 2021

updating annotation code to test build.
Saul Crumpton
committed

Commits on Mar 31, 2021

New Annotation Tables
jduke99
committed

Commits on Apr 1, 2021

Updated Annotation
jduke99
committed

Commits on May 8, 2021

Update CohortSample.java
jduke99
committed

Commits on May 18, 2021

annotion link button now works
Saul Crumpton
committed

Commits on May 19, 2021

removing results from Annotation.java
Saul Crumpton
committed

Commits on May 27, 2021

trying to make saving results to annotation_results table work
Saul Crumpton
committed
working annotation_results saving
Saul Crumpton
committed

Commits on Jun 2, 2021

initial commit for ResultController and ResultService
Saul Crumpton
committed

Commits on Jun 3, 2021

can now query for all results of a certain annotation ID
Saul Crumpton
committed
added todo in AnnotationController
Saul Crumpton
committed

Commits on Jun 15, 2021

default annotation GET now returns summary instead of full question entity. Also added additional param searches
Saul Crumpton
committed
removed some printlines, also added todo about performance
Saul Crumpton
committed

Commits on Jul 29, 2021

moving to prepared statements for annotation_results
Saul Crumpton
committed
working insertion and 'updating'. Tomorrow will change all QuestionID references to QuestionSetId
Saul Crumpton
committed

Commits on Jul 30, 2021

working results by Question Set ID, albiet slow
Saul Crumpton
committed
querying for results based on QuestionSetId now is much faster
Saul Crumpton
committed
adding in orderered params to all jdbcTemplate queries
Saul Crumpton
committed
removed all instances/mentions of long and changed to int. Also fixed super table query
Saul Crumpton
committed

Commits on Aug 3, 2021

working getSets query
Saul Crumpton
committed

Commits on Aug 11, 2021

creating annotation study table to aid in query speed for results super table
Saul Crumpton
committed

Commits on Aug 12, 2021

more work done on supertable- everything should be using annotation_study now
Saul Crumpton
committed
return plain Results from the getResults endpoint
Saul Crumpton
committed

Commits on Aug 13, 2021

changing sampleName to cohortSampleId in AnnotationController
Saul Crumpton
committed
changing sampleName to cohortSampleId in AnnotationController pt 2
Saul Crumpton
committed

Commits on Aug 14, 2021

complete results now querying by sampleId instead of Study ID when the param is passed
Saul Crumpton
committed

Commits on Aug 15, 2021

finding samples and sets by cohort ID now uses inner join instead of left
Saul Crumpton
committed

Commits on Aug 17, 2021

adding answer text in additon to answer value to the super table
Saul Crumpton
committed
setting AnswerValue now
Saul Crumpton
committed

Commits on Aug 18, 2021

using LinkedHashSet for QuestionSet to ensure we add questions in order
Saul Crumpton
committed

Commits on Aug 19, 2021

can now delete questionSets
Saul Crumpton
committed

Commits on Aug 20, 2021

Adding orderby for questionSet Question retrieval
Saul Crumpton
committed

Commits on Aug 21, 2021

checking to delete Results by annotation only instead of using questionid as well
Saul Crumpton
committed
getting answer value from result instead of answer for super table
Saul Crumpton
committed

Commits on Aug 22, 2021

Merge branch 'master' of https://github.com/OHDSI/WebAPI into annotation2.0
charhart
committed
merge master into annotation feature; rename flyway to reflect latest version
charhart
committed
Merge branch 'annotation2.0' of https://github.com/cahilton/WebAPI into annotation2.0
charhart
committed
removing todo from nav service to navigate by sample name- this will never be supported
Saul Crumpton
committed
removing unused result link in Annotation entity
Saul Crumpton
committed
removing unused sample_name field from annotation
Saul Crumpton
committed
removing unused getters and setters in Annotation Entity
Saul Crumpton
committed
removing unused imports from Annotation Entity
Saul Crumpton
committed
removing unused code in AnnotationController, also removing only-for-testing API endpoints
Saul Crumpton
committed
removing todo for searching for annotation by annotationID instead of by CohortSampleId and SubjectId and QuestionSetId
Saul Crumpton
committed
removing unused imports from AnnotationController and AnnotationService. Also removing non-useful code and unused imports
Saul Crumpton
committed
changing AnnotationRepository to use base findById instead of explicit query
Saul Crumpton
committed
updated AnswerRepository to use default findById method instead of query
Saul Crumpton
committed
updated QuestionRepository to use default findById method instead of manual query
Saul Crumpton
committed
removing all chaff from Annotation Result package- unused fields etc
Saul Crumpton
committed
updated QuestionSet to use default findById, removed unused imports and fields
Saul Crumpton
committed
removing more unused imports from QuestionSet repository
Saul Crumpton
committed
using sequence for annotation_id instead of generated value
Saul Crumpton
committed
using generator for all IDs in Question, QuestionSet, Answer
Saul Crumpton
committed

Commits on Aug 23, 2021

Commits on Oct 20, 2021

Merge branch 'OHDSI:master' into annotation2.0-cknoll
chrisknoll
authored

Commits on Nov 8, 2021

Merge remote-tracking branch 'remotes/upstream/master' into annotation2.0-cknoll
chrisknoll
committed

Commits on Nov 10, 2021

Added security migration scripts.
chrisknoll
committed

Commits on Nov 16, 2021

Merge pull request #1 from cahilton/annotation2.0-cknoll
charhart
authored