add some more links

index-rna.md

@@ -10,7 +10,7 @@ website: https://rna.usegalaxy.eu
 
 The RNA Galaxy workbench is a comprehensive set of analysis tools and consolidated workflows. The workbench is based on the Galaxy framework, which guarantees simple access, easy extension, flexible adaption to personal and security needs, and sophisticated analyses independent of command-line knowledge.
 
-The current implementation comprises more than 50 bioinformatics tools dedicated to different research areas of RNA biology, including RNA structure analysis, RNA alignment, RNA annotation, RNA-protein interaction, ribosome profiling, RNA-Seq analysis, and RNA target prediction.
+The current implementation comprises more than 100 bioinformatics tools dedicated to different research areas of RNA biology, including RNA structure analysis, RNA alignment, RNA annotation, RNA-protein interaction, ribosome profiling, RNA-Seq analysis, and RNA target prediction.
 
 The workbench is developed by the [RNA Bioinformatics Center (RBC)](https://www.denbi.de/network/rna-bioinformatics-center-rbc){:target="_blank"}. This center is one of the eight service units of the [German Network for Bioinformatics Infrastructure (de.NBI)](http://www.denbi.de){:target="_blank"}, running the German [ELIXIR Node](https://www.elixir-europe.org/){:target="_blank"}.
 
@@ -34,16 +34,16 @@ Analyse unaligned ncRNAs |  |  |  | [<i class="fa fa-share-alt" aria-hidden="tru
 CLIP-Seq data analysis from pre-processing to motif detection |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/clipseq/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/1327423){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=f5be5bcf9b9f171c){:target="_blank"} |  | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/joerg-fallmann/h/eclipworkflow){:target="_blank"}
 De novo transcriptome reconstruction with RNA-Seq |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/de-novo/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/254485){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=f026c4b8341ff94c){:target="_blank"} | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/transcriptomics-denovo-assembly){:target="_blank"} |
 Differential abundance testing of small RNAs |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/srna/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/826906){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=7734928ebc0a2654){:target="_blank"} [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=1ffc058273ab357e){:target="_blank"} | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/differential_abundance_testing_sRNAs){:target="_blank"} |
-Network analysis with Heinz | [<i class="fa fa-slideshare" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/network-analysis-with-heinz/slides.html){:target="_blank"} | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/network-analysis-with-heinz/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/1344105){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=12c80c5b5e2305d8){:target="_blank"} | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/network-analysis-with-heinz){:target="_blank"} |
-PAR-CLIP analysis |  |  |  | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=a108b575b16e6cb9){:target="_blank"} |  | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/joerg-fallmann/h/parclipworkflow){:target="_blank"}
+Network analysis with Heinz | [<i class="fa fa-slideshare" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/network-analysis-with-heinz/slides.html){:target="_blank"} | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/network-analysis-with-heinz/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/1344105){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=12c80c5b5e2305d8){:target="_blank"} | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/network-analysis-with-heinz){:target="_blank"} | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/videmp/h/rna-workbench-network-analysis-with-heinz){:target="_blank"}
+PAR-CLIP analysis |  |  | [<i class="fa fa-files-o" aria-hidden="true"></i>](http://doi.org/10.5281/zenodo.2553519){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=a108b575b16e6cb9){:target="_blank"} |  | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/joerg-fallmann/h/parclipworkflow){:target="_blank"}
 Reference-based RNA-Seq data analysis |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/1185122){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=9c7a218993788493){:target="_blank"} | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/ref_based_rna-seq){:target="_blank"} |
 RNA family model construction |  |  |  | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=8f2d958cee428ca1){:target="_blank"} |  |
 Scan for C/D-box sequences with segmentation-fold |  |  |  | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=3b717623054d5125){:target="_blank"} |  |
 Small Non-coding RNA Clustering using BlockClust |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/small_ncrna_clustering/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/1491876){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=c7026cd5578c8678){:target="_blank"} |  | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/videmp/h/rna-workbench-small-non-coding-rna-clustering-using-blockclust){:target="_blank"}
 Visualization of RNA-Seq results with CummeRbund |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-cummerbund/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/1001880){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=17e720bee3b9104f){:target="_blank"} | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/rna-seq-viz-with-cummerbund){:target="_blank"} | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/videmp/h/rna-workbench-visualization-of-rna-seq-results-with-cummerbund){:target="_blank"}
 Visualization of RNA-Seq results with Volcano Plot |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/2529117){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=fd156028b09d213a){:target="_blank"} |  | [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/videmp/h/rna-workbench-visualization-of-rna-seq-results-with-volcano-plot){:target="_blank"}
 Visualization of RNA-Seq results with heatmap2 |  | [<i class="fa fa-laptop" aria-hidden="true"></i>](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-heatmap2/tutorial.html){:target="_blank"} | [<i class="fa fa-files-o" aria-hidden="true"></i>](https://zenodo.org/record/2529926){:target="_blank"} | [<i class="fa fa-share-alt" aria-hidden="true"></i>]({{ page.website }}/workflows/run?id=4dae6d48ba08c037){:target="_blank"} |  | [<i class="fa fa-list-ul" aria-hidden="true"></i>](https://rna.usegalaxy.eu/u/videmp/h/rna-workbench-visualization-of-rna-seq-results-with-heatmap2){:target="_blank"}
-ViennaRNA Introduction | | | | | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/rnateam.viennarna){:target="_blank"}| [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}//u/joerg-fallmann/h/viennarnaintroduction){:target="_blank"}
+ViennaRNA Introduction |  |  | [<i class="fa fa-files-o" aria-hidden="true"></i>](http://doi.org/10.5281/zenodo.2555028){:target="_blank"} |  | [<i class="fa fa-magic" aria-hidden="true"></i>]({{ page.website }}/tours/rnateam.viennarna){:target="_blank"}| [<i class="fa fa-list-ul" aria-hidden="true"></i>]({{ page.website }}/u/joerg-fallmann/h/viennarnaintroduction){:target="_blank"}
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