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Update 2020-03-21-tool-update.md
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bgruening authored Mar 21, 2020
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Expand Up @@ -19,7 +19,59 @@ On 2020-03-21, the tools on UseGalaxy.eu were updated by our automated tool upda
- lofreq_indelqual was updated to [f4473557ffc7](https://toolshed.g2.bx.psu.edu/view/iuc/lofreq_indelqual/f4473557ffc7)
- lofreq_viterbi was updated to [cdaab621d454](https://toolshed.g2.bx.psu.edu/view/iuc/lofreq_viterbi/cdaab621d454)

## RAD-seq
## Metagenomic Analysis

- stacks2_cstacks was updated to [c541e62d6c56](https://toolshed.g2.bx.psu.edu/view/iuc/stacks2_cstacks/c541e62d6c56)
- dada2_assigntaxonomyaddspecies was updated to [1c9715cef808](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_assigntaxonomyaddspecies/1c9715cef808)
- dada2_dada was updated to [2222f08c8316](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_dada/2222f08c8316)
- dada2_filterandtrim was updated to [23fc35093b11](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_filterandtrim/23fc35093b11)
- dada2_learnerrors was updated to [c48d42d65d2b](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_learnerrors/c48d42d65d2b)
- dada2_makesequencetable was updated to [99c6929236fa](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_makesequencetable/99c6929236fa)
- dada2_mergepairs was updated to [69900ffd3b8e](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_mergepairs/69900ffd3b8e)
- dada2_plotcomplexity was updated to [1728e5ee871a](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_plotcomplexity/1728e5ee871a)
- dada2_plotqualityprofile was updated to [2a90d2fd3336](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_plotqualityprofile/2a90d2fd3336)
- dada2_removebimeradenovo was updated to [5b752525bd6f](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_removebimeradenovo/5b752525bd6f)
- dada2_seqcounts was updated to [f74c56549143](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_seqcounts/f74c56549143)

## hca_sc_utils_viz

- dropletutils_empty_drops was updated to [00b41600e1c1](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/dropletutils_empty_drops/00b41600e1c1)
- dropletutils_read_10x was updated to [48c1e7b39675](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/dropletutils_read_10x/48c1e7b39675)

## Proteomics

- maldi_quant_peak_detection was updated to [e66f552a3c47](https://toolshed.g2.bx.psu.edu/view/galaxyp/maldi_quant_peak_detection/e66f552a3c47)

## Phylogenetics

- hyphy_absrel was updated to [c5533a61ea60](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_absrel/c5533a61ea60)
- hyphy_bgm was updated to [fb142ad9b580](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_bgm/fb142ad9b580)
- hyphy_busted was updated to [4ff928db5592](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_busted/4ff928db5592)
- hyphy_fade was updated to [62971c58f0dc](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_fade/62971c58f0dc)
- hyphy_fel was updated to [6400b683aced](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_fel/6400b683aced)
- hyphy_fubar was updated to [da68d7067bf8](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_fubar/da68d7067bf8)
- hyphy_gard was updated to [c96eee4ebe63](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_gard/c96eee4ebe63)
- hyphy_meme was updated to [74b590fdc6a0](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_meme/74b590fdc6a0)
- hyphy_relax was updated to [c62ddfa33ac5](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_relax/c62ddfa33ac5)
- hyphy_slac was updated to [36a50b938d70](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_slac/36a50b938d70)
- hyphy_sm19 was updated to [1cd3060a8504](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_sm19/1cd3060a8504)

## Get Data

- sra_tools was updated to [aad3885b3216](https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/aad3885b3216)

## RNA Analysis

- chira_collapse was updated to [2a57d2ef04c6](https://toolshed.g2.bx.psu.edu/view/iuc/chira_collapse/2a57d2ef04c6)
- chira_extract was updated to [dea6bc47a47e](https://toolshed.g2.bx.psu.edu/view/iuc/chira_extract/dea6bc47a47e)
- chira_map was updated to [39bb70c2764e](https://toolshed.g2.bx.psu.edu/view/iuc/chira_map/39bb70c2764e)
- chira_merge was updated to [0170de5072d4](https://toolshed.g2.bx.psu.edu/view/iuc/chira_merge/0170de5072d4)
- chira_quantify was updated to [903f7a4cfbf0](https://toolshed.g2.bx.psu.edu/view/iuc/chira_quantify/903f7a4cfbf0)

## ChemicalToolBox

- fpocket was updated to [909c8763f127](https://toolshed.g2.bx.psu.edu/view/bgruening/fpocket/909c8763f127)
- rdock_rbcavity was updated to [5f73eb32ddbf](https://toolshed.g2.bx.psu.edu/view/bgruening/rdock_rbcavity/5f73eb32ddbf)
- rdock_rbdock was updated to [1709d2c3dc20](https://toolshed.g2.bx.psu.edu/view/bgruening/rdock_rbdock/1709d2c3dc20)
- sucos_clustering was updated to [58d18838e244](https://toolshed.g2.bx.psu.edu/view/bgruening/sucos_clustering/58d18838e244)
- sucos_docking_scoring was updated to [8161c08627bf](https://toolshed.g2.bx.psu.edu/view/bgruening/sucos_docking_scoring/8161c08627bf)

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